Gene loci information

Transcript annotation

  • This transcript has been annotated as Kynurenine 3-monooxygenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8288 g8288.t2 isoform g8288.t2 29561532 29563125
chr_2 g8288 g8288.t2 exon g8288.t2.exon1 29561532 29561899
chr_2 g8288 g8288.t2 exon g8288.t2.exon2 29561962 29562135
chr_2 g8288 g8288.t2 cds g8288.t2.CDS1 29562061 29562135
chr_2 g8288 g8288.t2 exon g8288.t2.exon3 29562364 29562433
chr_2 g8288 g8288.t2 cds g8288.t2.CDS2 29562364 29562433
chr_2 g8288 g8288.t2 exon g8288.t2.exon4 29562498 29562737
chr_2 g8288 g8288.t2 cds g8288.t2.CDS3 29562498 29562737
chr_2 g8288 g8288.t2 exon g8288.t2.exon5 29562799 29562886
chr_2 g8288 g8288.t2 cds g8288.t2.CDS4 29562799 29562886
chr_2 g8288 g8288.t2 exon g8288.t2.exon6 29562955 29563125
chr_2 g8288 g8288.t2 cds g8288.t2.CDS5 29562955 29563123
chr_2 g8288 g8288.t2 TTS g8288.t2 29564091 29564091
chr_2 g8288 g8288.t2 TSS g8288.t2 NA NA

Sequences

>g8288.t2 Gene=g8288 Length=1111
AGTAAGTAAAAAGTTGAGAATAACAAATTGATAATAAATTCCCAATTACTCTGAGTAAAT
TTTATTTATTTTGAATGGAAAACATTAAAAACGCTGATGATTCAGTACTATTTAATTTCA
ATAATTTGCTGTTAGTCGTGTCTGCACGTGTGATTTCGCCACACGCACAAATTTTAGGCG
ATTTCATTTTAAGTAATTAAATAAATTATTATAATCTTACCTAGTTGTAAATATTCAGTT
CTGATTAAAATAAATCAATTTTTTGTCTTTAAAAATTCCATCTGCTGTTTAAACAGCAAA
AAATCAACTTTCGAGAATTTCATTCAAATGTGAAATATGCAAAGTTTTGAAATTCCTTAT
CTTGATTTGAGCTGTTTTCTCTAAAATATATTTTCAGGTCACAAAAAAAATTCTTATATA
AGACTTAAAAAATTATCTAGCATTGACAAAAGGCAAAAAATCATATAATGGCATTTACTA
ATGGGTTCACAAAACACACTAAGCAAGAATGCTTAGATATTGCAATCGTCGGGGGTGGTC
TGGTCGGTTCATTAGCAGCATTGCATATGGCAAAAAAGGGTCATAAAGTTAGTCTTTATG
AATATCGCGAGGACATTCGAACTGCTGAGCTGGTCATCGGACGAAGTATCAATTTGGCAT
TATCTGTTCGCGGACGTAAAGCATTGAAAGAGGTCGGCCTTGAAGATAAGCTTTTAGAAC
ATGGGATTGCCATGTACGCACGTATGATTCATAATACTGATGGAACACGAAATGCAATTC
CGTATGATAGACGTAATCATCAAGCTATATATTCTGTTGGTCGCAAATATTTGAATGAAG
TTCTACTCACAGCGGCTGAAAAGTATCCAAACATAAATCTCAACTTTAACAAGAAAATGG
TCGGTGGAAAAGTGGATAAAGGCGAAGTGACTTTTATTGATACAACCAATGAGGAGAAAA
AAAATATTTTTGCCGATTTAATCATTGGATGTGATGGCGCTTTCTCATCTGTTCGACGCG
AAATGCTCAAAAGAAATGGCTTTAATTATAGTCAAACTTACATAGAACATGGTTATCTTG
AATTATGTATACCGCCAGCTGCAGATGGAGG

>g8288.t2 Gene=g8288 Length=214
MAFTNGFTKHTKQECLDIAIVGGGLVGSLAALHMAKKGHKVSLYEYREDIRTAELVIGRS
INLALSVRGRKALKEVGLEDKLLEHGIAMYARMIHNTDGTRNAIPYDRRNHQAIYSVGRK
YLNEVLLTAAEKYPNINLNFNKKMVGGKVDKGEVTFIDTTNEEKKNIFADLIIGCDGAFS
SVRREMLKRNGFNYSQTYIEHGYLELCIPPAADG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g8288.t2 Gene3D G3DSA:3.50.50.60 - 16 214 0
2 g8288.t2 PANTHER PTHR46028:SF2 KYNURENINE 3-MONOOXYGENASE 13 213 0
3 g8288.t2 PANTHER PTHR46028 KYNURENINE 3-MONOOXYGENASE 13 213 0
5 g8288.t2 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 17 39 0
4 g8288.t2 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 183 0
1 g8288.t2 Pfam PF01494 FAD binding domain 17 186 0
6 g8288.t2 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 17 188 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0071949 FAD binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed