General information for g8290.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8290 is located on chr_2: 29569529..29570578 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8290 | g8290.t3 | TTS | g8290.t3 | 29569501 | 29569501 |
| chr_2 | g8290 | g8290.t3 | isoform | g8290.t3 | 29569529 | 29570578 |
| chr_2 | g8290 | g8290.t3 | exon | g8290.t3.exon1 | 29569529 | 29569692 |
| chr_2 | g8290 | g8290.t3 | cds | g8290.t3.CDS1 | 29569529 | 29569692 |
| chr_2 | g8290 | g8290.t3 | exon | g8290.t3.exon2 | 29569741 | 29569824 |
| chr_2 | g8290 | g8290.t3 | cds | g8290.t3.CDS2 | 29569741 | 29569824 |
| chr_2 | g8290 | g8290.t3 | exon | g8290.t3.exon3 | 29569877 | 29569950 |
| chr_2 | g8290 | g8290.t3 | cds | g8290.t3.CDS3 | 29569877 | 29569950 |
| chr_2 | g8290 | g8290.t3 | exon | g8290.t3.exon4 | 29570008 | 29570578 |
| chr_2 | g8290 | g8290.t3 | cds | g8290.t3.CDS4 | 29570008 | 29570030 |
| chr_2 | g8290 | g8290.t3 | TSS | g8290.t3 | 29570618 | 29570618 |
Sequences
>g8290.t3 Gene=g8290 Length=893
ATGTCTCTTAAATTTTTATTATTTTTTTTGACCTTTTCTATTTGTTCCTATGCTTTAAAA
TTTGATACAATTTCTCAATCATCATTAAAGTTTAATAGAAAGATTGCAGGTTCTTCATAT
AATTTTTAATTTCAGCAAATTTTACAACGATTTTTTATTAAATTTTAGGTGGAACCAAAG
CAGAAAGAAATGAATTTCTTTATAAATGTGCTCTCTATATTACAAAAATAACAGAAGAAT
TAAATTTTTGTTCAGGATCAATAATATCAGATCGATTCGTAATTTCAGCAGCACACTGCT
TTTCGAACATTACTACTGGAGTTATATTTGCTGGTGTGCACAATTTAAAAGAAGAAGAAG
CACCTTACGATTATGATTTTGAAGTAACAGATGTAATTCTACACGAAGAATATGATGCAT
CAACATATTTAAATGACATTGCTTTAATTAACGTCACTGCATATCCTTTTGATTTTACCA
ATTCAAAAAATTTTATTCAAAAAATTCAAATTGTTACTGAATTAATAAGCAATGATAATT
TAGTAGGAATGATTGGTCGAATTGCAGGATGGGGACAAACGACAGATGAAAATCGTGAAA
TATCAAATGAACTTTTGTATATTGATGCTGAAATTATTGACTTGTATAATTGTAAAGTAA
TTTTTGGAAATAAAATTAGATCAACAAATCTTTGTCTTAAAAGTGATGATAGTCGATCAA
CATGTCAAGGTGATAGCGGTGGTGGACTTCAAGTGACTATTAATGGTGAAAATTTCATCG
TAGCTCTGGTTAGTTTTGGTGCAGAAGATGGTTGCGAAAAGAATTACCCGGTTGTATTTA
CTTTTTTACCACCATATTTCAAATGGATAAATTCAATTGTCAACAGAGATTAA
>g8290.t3 Gene=g8290 Length=114
MIGRIAGWGQTTDENREISNELLYIDAEIIDLYNCKVIFGNKIRSTNLCLKSDDSRSTCQ
GDSGGGLQVTINGENFIVALVSFGAEDGCEKNYPVVFTFLPPYFKWINSIVNRD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8290.t3 | Gene3D | G3DSA:2.40.10.10 | - | 1 | 114 | 0.000 |
| 2 | g8290.t3 | PANTHER | PTHR24250:SF56 | SERINE PROTEASE P96 | 1 | 110 | 0.000 |
| 3 | g8290.t3 | PANTHER | PTHR24250 | CHYMOTRYPSIN-RELATED | 1 | 110 | 0.000 |
| 1 | g8290.t3 | Pfam | PF00089 | Trypsin | 4 | 107 | 0.000 |
| 6 | g8290.t3 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 112 | 12.042 |
| 4 | g8290.t3 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 3 | 113 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed