General information for g831.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative WD repeat-containing protein 43.
Parent gene
- The parent gene g831 is located on chr_3: 6352254..6354283 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g831 | g831.t2 | TSS | g831.t2 | 6352145 | 6352145 |
| chr_3 | g831 | g831.t2 | isoform | g831.t2 | 6352254 | 6354009 |
| chr_3 | g831 | g831.t2 | exon | g831.t2.exon1 | 6352254 | 6352439 |
| chr_3 | g831 | g831.t2 | cds | g831.t2.CDS1 | 6352254 | 6352439 |
| chr_3 | g831 | g831.t2 | exon | g831.t2.exon2 | 6352494 | 6352592 |
| chr_3 | g831 | g831.t2 | cds | g831.t2.CDS2 | 6352494 | 6352592 |
| chr_3 | g831 | g831.t2 | exon | g831.t2.exon3 | 6352647 | 6354009 |
| chr_3 | g831 | g831.t2 | cds | g831.t2.CDS3 | 6352647 | 6354008 |
| chr_3 | g831 | g831.t2 | TTS | g831.t2 | 6354345 | 6354345 |
Sequences
>g831.t2 Gene=g831 Length=1648
ATGGATAATTTGCATTTAAAAGAATTCTCTCCGGATCAAGAACTTTTCGCTATAATCCAA
AATGATGGTGTTTTAAAAATTTGGGATACTGAAACAAGCATTTTAAAGCAAGAATATGTG
CCGAATCTTCATCTTTCTTCTCCTTGTACAGCATTAAAATGGATTAAAATTGCTCTCCGA
AAGAAGCGAAAATCACAAGGTAGCGAGCATGTTCAAGGAAGCTATTTCATTTTATTAGGA
ACAAATACAGGAGGGCTCTCTTTATATTCATATACAACAGCTAAAATTGAATCAGTTTTT
AGTGGCGATGGACATTCAAAAGCAATAACATCAATAGCACATGATGGGGCAAATACACTG
TATACAACTGGATTAGATTCACAAGTGATAAAATGGAATATCAAAAAATGTAAACAAGAG
TCATCTTTTAAGTGTGGTCCGGAGAAACCAACAGCAATTTGTCTCACAGAAAATGGTCAA
CAAATAATTACAGCATCAAAAACTATTAAAGTATGGGATAGCAATTCAAATGAACTTCTT
TATACTCTCACTGGTCACTCATCTGATATAATTGTGCTCAAATCATTTGAATGTAATGAA
GAGAACTTCATTCTAAGTGCGTCGAAGAACGATCGAAACTTGTCGTTATGGAAAATCTCT
GAAAAAGGATCAGCAAGTGGGATTTTTACACTCTTGAACAATTCACCGAATCAATTTGAT
TACAATGTAAAAGACACACATTTGAACATTGTTTGTATTTGCAGGAATGAATCACTTGCA
TATTTCACTGCAGATTTAACAAAAATCAAAAGCTCAAAAACAGTGAAAACAAAATTCACA
TTAGAAATAGCTTCAGAAGATAAATCAAGTGCCGTGAAACATATTCCAGTCGTTTGTGCT
TCAATAAGTCCTTGGTCAGGAATAATAATCGGTTATGGAAACTCAATTATGAAATTTGAA
ACAATCCCAAGTCAACAAGAGACTAAAAATACAATTCTTGTAAGAAAAGATCCACTTAAA
ATGAAAGTAGCAAAGAAGGACGTAAAAGATGGGGTAATTAATGAAGCTTTAAATATTGTT
ACACCAGTTACAGATCAAAACACTGAAGTGTTGAATGTCATCAGTGCGAAGAAGCGAAAT
CAAAAACCAGCAGAAATTCCACTTGGAATTAGATTTGAAAATTTAACTGTTGGCAGTGGC
AGTTCAAGACCAAATGCAAAGAAATTGACTTATCAATTGATTCAAGGATTACATGGAAAT
GATGCAAATATTCTTCGCAATGTTTTGCGTCAAACTGATGAAGAGACTGTTCGATTGACT
GTAAAATACTTACCAGCTCAATATGTAATGTCATTTGTAAATGAATTGTCACTTTTAATG
TCAAAGAAAACAGCTGGTTCTGAAATGGCTTTAACTTGGCTTCGTCATTTAATTCAGACA
CATGCAAGTAGTTTGATGGCATATGGTCATATAAATTTGATCAACACATTTGGGACGACT
CTTGGAATTATTGATCATCGAACACAGAATTTACCTGCTTTGATGCGATTGAGAGGAAGA
TTAGATTTATTAGTTGGACAGTTGAAACAAAATAGTGATTTTGATGATGAAATTCATAAT
GAAAACCTTCTTACCTATGAAGATTCTG
>g831.t2 Gene=g831 Length=549
MDNLHLKEFSPDQELFAIIQNDGVLKIWDTETSILKQEYVPNLHLSSPCTALKWIKIALR
KKRKSQGSEHVQGSYFILLGTNTGGLSLYSYTTAKIESVFSGDGHSKAITSIAHDGANTL
YTTGLDSQVIKWNIKKCKQESSFKCGPEKPTAICLTENGQQIITASKTIKVWDSNSNELL
YTLTGHSSDIIVLKSFECNEENFILSASKNDRNLSLWKISEKGSASGIFTLLNNSPNQFD
YNVKDTHLNIVCICRNESLAYFTADLTKIKSSKTVKTKFTLEIASEDKSSAVKHIPVVCA
SISPWSGIIIGYGNSIMKFETIPSQQETKNTILVRKDPLKMKVAKKDVKDGVINEALNIV
TPVTDQNTEVLNVISAKKRNQKPAEIPLGIRFENLTVGSGSSRPNAKKLTYQLIQGLHGN
DANILRNVLRQTDEETVRLTVKYLPAQYVMSFVNELSLLMSKKTAGSEMALTWLRHLIQT
HASSLMAYGHINLINTFGTTLGIIDHRTQNLPALMRLRGRLDLLVGQLKQNSDFDDEIHN
ENLLTYEDS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g831.t2 | Gene3D | G3DSA:2.130.10.10 | - | 6 | 296 | 0.000 |
| 2 | g831.t2 | PANTHER | PTHR44267 | WD REPEAT-CONTAINING PROTEIN 43 | 8 | 548 | 0.000 |
| 1 | g831.t2 | Pfam | PF04003 | Dip2/Utp12 Family | 420 | 524 | 0.000 |
| 8 | g831.t2 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 102 | 227 | 10.891 |
| 6 | g831.t2 | SMART | SM00320 | WD40_4 | 93 | 133 | 0.200 |
| 4 | g831.t2 | SMART | SM00320 | WD40_4 | 136 | 173 | 0.510 |
| 5 | g831.t2 | SMART | SM00320 | WD40_4 | 176 | 218 | 0.400 |
| 3 | g831.t2 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 246 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K14546 (U3 small nucleolar RNA-associated protein 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
