General information for g8323.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein encore.
Parent gene
- The parent gene g8323 is located on chr_2: 29756917..29766705 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8323 | g8323.t1 | isoform | g8323.t1 | 29756917 | 29766705 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon1 | 29756917 | 29757075 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS1 | 29756917 | 29757075 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon2 | 29757521 | 29758515 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS2 | 29757521 | 29758515 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon3 | 29759154 | 29759304 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS3 | 29759154 | 29759304 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon4 | 29759371 | 29759547 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS4 | 29759371 | 29759547 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon5 | 29759612 | 29759710 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS5 | 29759612 | 29759710 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon6 | 29759783 | 29759970 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS6 | 29759783 | 29759970 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon7 | 29760315 | 29760506 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS7 | 29760315 | 29760506 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon8 | 29760585 | 29761057 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS8 | 29760585 | 29761057 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon9 | 29762421 | 29762557 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS9 | 29762421 | 29762557 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon10 | 29762619 | 29762879 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS10 | 29762619 | 29762879 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon11 | 29763955 | 29764005 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS11 | 29763955 | 29764005 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon12 | 29764318 | 29764549 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS12 | 29764318 | 29764549 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon13 | 29764609 | 29766371 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS13 | 29764609 | 29766371 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon14 | 29766444 | 29766543 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS14 | 29766444 | 29766543 |
| chr_2 | g8323 | g8323.t1 | exon | g8323.t1.exon15 | 29766629 | 29766705 |
| chr_2 | g8323 | g8323.t1 | cds | g8323.t1.CDS15 | 29766629 | 29766705 |
| chr_2 | g8323 | g8323.t1 | TTS | g8323.t1 | 29766920 | 29766920 |
| chr_2 | g8323 | g8323.t1 | TSS | g8323.t1 | NA | NA |
Sequences
>g8323.t1 Gene=g8323 Length=5055
ATGAGTTCTGCTGTTTCATCCTCACAAGTCACGACGAGTACTCCGATCCTTGTTACCACA
CCATCATCCGAGACAAAACCATTTGGTGAACATAAACGCGATGATTCCAGTGACGATCAA
CGGCAACAATTAAATAAACAGACAAAGACATACACACGAGGTAACAGTAATAAGAATAAA
CAGCTAACACGAAGTCATGCAATGAAAGAGTCCGCATCGCCACCACGCACACCAAATTCA
CATTCACCCAACGACATGAAATCGCCCTCCCCAACGGCAGCTGCCTTGAACTCGACAGAC
TCGGACTCGGGAGCCAATACATCGACGACAACAACAGCTGTCACTACTTCATCCTCTTCG
TCATTGCTCTTAACCGCACCAACTTTTATTCTGCCACAGCCCGAATCGAGTAGTGTTGGC
GGAAAGAGTCAGTTAGACATTGAATTTCCAAAACTCACACCACCAAAGACAAAAGTTGGT
TGGAACTCATCAAATAGTGGTCAACCACAGCAACAGCGTAATCGAAAGTCTGTTTCTTCA
GACACATCGTCAAATAATAATTCCCTATGCGAGGACACAAATGAATCTCATGTTAATGAC
AAACAACAACAGCAACCGAAAACAGGATCTCAATCAATCTCAGTCACAACTGCATGTACT
CAGCAGCAGCAACAATCTTCTCCATCATCATCACCAAGTGTCAGTGAATGTGCAAATCAG
TCTGAGTTATTTAATCATGATGAGCGTGTGATAATTTCACCATCAAGAGCTCAATGTAAA
AGTCCCAATTTATCATCATCATCACATAATAATAATATAAATAATAATAATATTAGTAAT
AGTGGTAATAATAATAATAGTAATAGTAATAATTATAATAATACTTCTACTGGAACGAAA
TCGGCTACGCCATCATATCCAATAAATATCAAAAATAAGCCTCCACTTAAAAATATGGGC
TCATCATCGTCTTGTGAAGGTGGAAACACATCGTCGGGATTTATTTCACGTGATAGTTCA
AGTGAACAGTTTGTCGATCAAAATGGTATCGATTTAGTGCAGTTCTTTAAAGAGACTCTC
AATAAAAATGCTAAAGATCGCAATATGTTGATGAAAATTGAACGAGAACTGCTACAATTG
GCTGTGGATCAAACGGGTCGTACTTTCGTTAAATTTCCACCAATGTCTTCCTACAATCGC
ATGCTCGTGCACAGAACAGCGGCATATTTTGGAATGGATCACAATGTTGATGCCACACAG
CAATGTGTCATTGCGTCGACAACTAAGGAAACAAGAATCCCCGATATTCGCTTCAAGACA
CTCATTCGTGACACATTTAGTGAGGAGCCGCGAAAGTCTATTTTGAAACGAGAAACACAT
AGCTTTGAGGATTATAGACAGGGTGGCTTACTTTCAGTTCAACGTAGCATTCTCAATCGT
AAGGCGAAAAGTTTTGAGGAACGAGATGAAGAATATGAGAAGGAATGGCAATGGATTCAC
CACAATTCAGTTGGTGGTGGAGGTAGTGAAATCTCCAGCAAAGTCAAAGTTCCAATTCGT
TTAATGAAAATCCACTCTTCGTCAATGGATGGTCGCTATATTGATAAAGCACCAGTTTCA
AAATCCCATTCATTCGGCGGTTATGGCGGACCTAACGTACAACTCATGCGGGATGATTCG
ATTACGTCAAGTAAGAGCGCTGGTCCACGATTGCATAAACAAGACTCAACAACAAGCACA
ACATGGAGACTTTCACCATCAAGTAGTGGTTATAAAACACAATCATTGCGTTCAGTTACG
CCATCTCCCACTGGCGGCTATGGAAGTGATACACCCGAGCCATCGAATGCACCGGAATCG
ACAAGAGGTGTTGTATGGGCTGTGACCGATTTAGCTAGTGTGCCAAAAGGCAGTTTGATA
ATTGATCCGCAAACACTACAACCGATTTTAAATCAAGATGGCTCGCTTTATCATTTTGAT
CCTTCTAATCCACCAACAACAACGACGACGACGTCAAGTGGAAGTCGATATGGAAGTGCA
CGTAAGAAAGCAGACCGACCGAAATTGTTGAACAATAATCTAAACTATAATAATAATAAC
AATAATAATAATAACATGAGTAGTAGTAACAAGCCTAACAATATTAGAGATCATACTAAC
AGTGGAAGTACAGATAATGAAAAATCGACCACACTGCTTAGTAGCGGCAAGCATGTGGCG
TCTAAATTTAATAATAATCAAATGTCGCATAACAATATTAACAATGAAATTGACGACGAT
GATGAAGGTGAAGAAGATGAGGAAGATATTGATGATGATGAAAATGATCCCACAGATATG
CTGCCATTGGATGTGCTATCACCAAAAAATCAATGTGAATCGTTAGTCAATGAAGATGAC
TGTAAAACCAAAGATGATATATGTGAAAATAAATCTAGTCAATGTGAACTAAAAAATCAG
CCATCTCATTTAAATACAGAGGAATTAGTGTCACCAAAGCAAAAGAATCAATCAACAAGT
CCAAATCTTCCTCTTAATGACACAATGACTATCAATGAAGAAGAGGTTGAGGAATCTGTC
ACACCCACGTCGAGCATACAGCCGATTATTGAAGAGGATGCGAGTGTTGATTCGAAGAAA
GATGAAATCACGTCCGCAACAGAAACGCCGCCCGTCCAAGAGATCAGATTCCAAGCGAAT
CCATACACAAATACAGCTACTGTTGCTGCTTCAACGACACCATCAATGCCTCCTACAGTA
TTGAGCTATGCTCCAGCTGCTCCATTTGCCACTGCTCCTATTGAGACTGCAGGAACTATT
TATCATACAGGGCCTGATGGCACTATGTACGTTCCTGTGATGTATTCATATACTACGTCC
ACGGAAAATGAGGTACCAAGTTGTTGGGTACCAATTTTCGATCAAGGTGCTAGAGGAGAT
CCAAATTTGACAGTTTTGCCTTATAATAATGGGCCGACAATATATCAAAGCCCTGTGGTA
TATTCTACTGAACAATTTACAAATCCACCAGCTATTGCTGCTGGACAAGTTACACAATAT
CCCATTAGTGCATATCCTGCTATGGGTTATGCTGCTACCACTTATCCTGTTAATGGTGCT
CCATATCAAAATATTTGGCCACAACCAATGACATATTTTTTACCGCCATCAGCTACACCA
GCTCCCGCACAGGTCTTAGTACCACCTGCGGCACCACAAACCCCAAATGCAACTATGATA
CAATCAGCATCGAATAATTCACACAATCCAAGTACAAATGCTACAGGTGGAAGAAGAAAT
TCACCACAAAATAATAGCAACAATTCGAATGGCAATGGAGTGTCGAGTGGAGCTCAGACA
GCTGTTGCCACAGCTGTTCCATTGCAGACATTTCCTTCAAGTGTTCCTTTCTCACTAGCC
ACCTCGGAGACGACATCGGCTTCAGGACCAACTTTATATGCGATTCCTCCTTCTATGTAT
CCTGCGAATATGCTCCCTGCCTATTCACCAGCGACTGGTTTTTATCAACCTATGCCTCAT
CCACAAGCGAATACCACGATTATAAGCTCTGTAATTCCACATTCGAATGCACATCATCCT
GGTACAGTTCCATCAACACCACATTCATTTCAAGCTACAACTGCCAGTGGTGAAGTTTTG
ACTCATTTTCCATTCAATCAACAACCACCGAATATTGTTAATAATAATACAGCATCAACT
CCACAATCAGCTCCCAGTACACCATTATCATTGACAACAATGCCACCAAATTTTAAAAAT
CAACCGATTTTTACAACTCAGCCATTAATTGCTGCCACTCCTGTACATATTGCACACACA
TATGACAATGACAAGAAAAATAACAGCAGCAACAACAACAATAATCCACCAAAAAAGTTC
AATTGCGGTGGTAATGGCATTTTAAGCACTCCACCTGCCTTTTCGCACTCGAATGCGACA
AAATCATCAAATAATCCACGTCATCAACAACAGCAGCAGCAGCCATTAGGTGGTTATCAA
TCATCAACGAGTTTAGCAAGTGGAAATGGAAATAAAAAGAACATGCACAGTAATTGTAAT
AATCTTATTAATAGCACTAGTAATAGTCATAGTGATGATGCAAATAGTCTAAGCAATAGT
AATATGAGTAGTAGCAATTATAGCAGTAGCAATCGAGTAAAAAATTCATCAAATCGTGAT
CAAAATTCATCATCAACAGCTAGTGGTACTGGTGGCAGCTATCAGCCAAAATCATCATAT
AAGCAGAGCTATAATAGTAACAGCAACAGTCCCAATTCGAATGACAATTCAGAGAGCACC
AATAATAATAACAATGGCAGCAAATTTCAACCACGTGGACCATCACGCATTCCTCCGCTT
GATTTGAAGCGCAACAACAGTAATAGCGGTTCGAATGTGGTCATGAATCATCACACAAGA
AGCACGCCGAGCACAAATTCCACAGAGTCAAATAATTCTCCCAACAGTATTACGTCATAT
GATCATTCGAGAGGCAGCAACAGCTATCATCATTATTCGGCACAGCAGCAATCGCATCAG
CCATCGCATCACCATACACAATCATCACATCATCAACATCATCCACCACAGCCTTCATAT
CAATCGAGTGGCGGAACACATTTCTATCGAGGCGGAAGTGCAGGTGCAGTCAACACTCAT
CATAGTGCGAATAGTGGCGGAAATAGCACAGAATCACCATCAATTCAAACTTGCTTCCCA
TTCAACGTACACTCACAGAATGCTGGCACTTCAACGCCATTACTCGACTCATGTCATCCA
CAGACGCTCATTGGCTACAATAATCCTATGGCAGCGGGCATGTATGTAAAATTTGGACAG
GCATTTACATTCGCAAATCCATTGCCCAACAATCGAAAATCTCCATCAAATGATATAAGA
ACACCATTGACACCGCTTGCAGCAGGTGTATATTCAACAACAACTATGATGTTGCCTGGA
GGTCCGCGTCCAATTAATTCACGCACGGTGCAAAACAATCACCATTATAAGGGCAATCGC
ACACAACAGAGATAA
>g8323.t1 Gene=g8323 Length=1684
MSSAVSSSQVTTSTPILVTTPSSETKPFGEHKRDDSSDDQRQQLNKQTKTYTRGNSNKNK
QLTRSHAMKESASPPRTPNSHSPNDMKSPSPTAAALNSTDSDSGANTSTTTTAVTTSSSS
SLLLTAPTFILPQPESSSVGGKSQLDIEFPKLTPPKTKVGWNSSNSGQPQQQRNRKSVSS
DTSSNNNSLCEDTNESHVNDKQQQQPKTGSQSISVTTACTQQQQQSSPSSSPSVSECANQ
SELFNHDERVIISPSRAQCKSPNLSSSSHNNNINNNNISNSGNNNNSNSNNYNNTSTGTK
SATPSYPINIKNKPPLKNMGSSSSCEGGNTSSGFISRDSSSEQFVDQNGIDLVQFFKETL
NKNAKDRNMLMKIERELLQLAVDQTGRTFVKFPPMSSYNRMLVHRTAAYFGMDHNVDATQ
QCVIASTTKETRIPDIRFKTLIRDTFSEEPRKSILKRETHSFEDYRQGGLLSVQRSILNR
KAKSFEERDEEYEKEWQWIHHNSVGGGGSEISSKVKVPIRLMKIHSSSMDGRYIDKAPVS
KSHSFGGYGGPNVQLMRDDSITSSKSAGPRLHKQDSTTSTTWRLSPSSSGYKTQSLRSVT
PSPTGGYGSDTPEPSNAPESTRGVVWAVTDLASVPKGSLIIDPQTLQPILNQDGSLYHFD
PSNPPTTTTTTSSGSRYGSARKKADRPKLLNNNLNYNNNNNNNNNMSSSNKPNNIRDHTN
SGSTDNEKSTTLLSSGKHVASKFNNNQMSHNNINNEIDDDDEGEEDEEDIDDDENDPTDM
LPLDVLSPKNQCESLVNEDDCKTKDDICENKSSQCELKNQPSHLNTEELVSPKQKNQSTS
PNLPLNDTMTINEEEVEESVTPTSSIQPIIEEDASVDSKKDEITSATETPPVQEIRFQAN
PYTNTATVAASTTPSMPPTVLSYAPAAPFATAPIETAGTIYHTGPDGTMYVPVMYSYTTS
TENEVPSCWVPIFDQGARGDPNLTVLPYNNGPTIYQSPVVYSTEQFTNPPAIAAGQVTQY
PISAYPAMGYAATTYPVNGAPYQNIWPQPMTYFLPPSATPAPAQVLVPPAAPQTPNATMI
QSASNNSHNPSTNATGGRRNSPQNNSNNSNGNGVSSGAQTAVATAVPLQTFPSSVPFSLA
TSETTSASGPTLYAIPPSMYPANMLPAYSPATGFYQPMPHPQANTTIISSVIPHSNAHHP
GTVPSTPHSFQATTASGEVLTHFPFNQQPPNIVNNNTASTPQSAPSTPLSLTTMPPNFKN
QPIFTTQPLIAATPVHIAHTYDNDKKNNSSNNNNNPPKKFNCGGNGILSTPPAFSHSNAT
KSSNNPRHQQQQQQPLGGYQSSTSLASGNGNKKNMHSNCNNLINSTSNSHSDDANSLSNS
NMSSSNYSSSNRVKNSSNRDQNSSSTASGTGGSYQPKSSYKQSYNSNSNSPNSNDNSEST
NNNNNGSKFQPRGPSRIPPLDLKRNNSNSGSNVVMNHHTRSTPSTNSTESNNSPNSITSY
DHSRGSNSYHHYSAQQQSHQPSHHHTQSSHHQHHPPQPSYQSSGGTHFYRGGSAGAVNTH
HSANSGGNSTESPSIQTCFPFNVHSQNAGTSTPLLDSCHPQTLIGYNNPMAAGMYVKFGQ
AFTFANPLPNNRKSPSNDIRTPLTPLAAGVYSTTTMMLPGGPRPINSRTVQNNHHYKGNR
TQQR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8323.t1 | CDD | cd02642 | R3H_encore_like | 366 | 428 | 6.4892E-19 |
| 6 | g8323.t1 | Coils | Coil | Coil | 475 | 495 | - |
| 7 | g8323.t1 | Coils | Coil | Coil | 1678 | 1684 | - |
| 5 | g8323.t1 | Gene3D | G3DSA:3.30.1370.50 | - | 338 | 461 | 3.9E-39 |
| 27 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 239 | - |
| 30 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - |
| 25 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 42 | - |
| 24 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 143 | - |
| 14 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 239 | - |
| 15 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 340 | - |
| 12 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 618 | - |
| 22 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 620 | - |
| 16 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 678 | - |
| 26 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 691 | - |
| 13 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 778 | - |
| 28 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 778 | - |
| 19 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 840 | - |
| 17 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1117 | - |
| 21 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1316 | 1341 | - |
| 18 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1368 | 1451 | - |
| 20 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1368 | 1461 | - |
| 23 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1501 | 1523 | - |
| 29 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1501 | 1543 | - |
| 11 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1662 | 1684 | - |
| 10 | g8323.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1665 | 1684 | - |
| 2 | g8323.t1 | PANTHER | PTHR15672:SF12 | R3H DOMAIN-CONTAINING PROTEIN 1 | 194 | 496 | 2.0E-40 |
| 3 | g8323.t1 | PANTHER | PTHR15672 | CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN | 194 | 496 | 2.0E-40 |
| 1 | g8323.t1 | Pfam | PF01424 | R3H domain | 370 | 415 | 1.2E-8 |
| 32 | g8323.t1 | ProSiteProfiles | PS51061 | R3H domain profile. | 367 | 431 | 11.098 |
| 31 | g8323.t1 | ProSiteProfiles | PS51673 | SUZ domain profile. | 432 | 504 | 8.898 |
| 9 | g8323.t1 | SMART | SM00393 | R3H_4 | 350 | 428 | 1.5E-7 |
| 4 | g8323.t1 | SUPERFAMILY | SSF82708 | R3H domain | 339 | 457 | 2.35E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003676 | nucleic acid binding | MF |
KEGG
Orthology
- This transcript has been annotated with K02360 (a component of the cytoplasm (encore))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
