General information for g8326.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8326 is located on chr_2: 29781564..29781869 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8326 | g8326.t4 | isoform | g8326.t4 | 29781564 | 29781869 |
| chr_2 | g8326 | g8326.t4 | exon | g8326.t4.exon1 | 29781564 | 29781869 |
| chr_2 | g8326 | g8326.t4 | cds | g8326.t4.CDS1 | 29781810 | 29781869 |
| chr_2 | g8326 | g8326.t4 | TTS | g8326.t4 | 29781988 | 29781988 |
| chr_2 | g8326 | g8326.t4 | TSS | g8326.t4 | NA | NA |
Sequences
>g8326.t4 Gene=g8326 Length=306
GGTGGCAAGGGATTAGGCAAAGGCCTAGGAAAAGGAGGTGCAAAGCGTCATCGCAAAGTT
CTTCGTGATAACATCCAAGGTATTACAAAACCAGCAATTCGTCGCTTAGCTCGTCGTGGT
GGTGTCAAGCGTATCTCAGGCTTAATTTATGAAGAAACTCGTGGCGTTTTAAAAATCTTT
TTGGAAAATGTTATTCGTGATGCAGTCACATACACTGAACATGCCAAACGCAAGACAGTT
ACAGCTATGGATGTCGTTTATGCCTTGAAACGTCAAGGACGCACTCTCTATGGTTTCGGA
GGATAA
>g8326.t4 Gene=g8326 Length=19
MDVVYALKRQGRTLYGFGG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g8326.t4 | Gene3D | G3DSA:1.10.20.10 | Histone | 1 | 19 | 2e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046982 | protein heterodimerization activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
