General information for g8333.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Mitogen-activated protein kinase kinase kinase 15.
Parent gene
- The parent gene g8333 is located on chr_2: 29797425..29802689 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8333 | g8333.t3 | TSS | g8333.t3 | 29797320 | 29797320 |
| chr_2 | g8333 | g8333.t3 | isoform | g8333.t3 | 29797425 | 29798750 |
| chr_2 | g8333 | g8333.t3 | exon | g8333.t3.exon1 | 29797425 | 29797865 |
| chr_2 | g8333 | g8333.t3 | cds | g8333.t3.CDS1 | 29797785 | 29797865 |
| chr_2 | g8333 | g8333.t3 | exon | g8333.t3.exon2 | 29797939 | 29798094 |
| chr_2 | g8333 | g8333.t3 | cds | g8333.t3.CDS2 | 29797939 | 29798094 |
| chr_2 | g8333 | g8333.t3 | exon | g8333.t3.exon3 | 29798163 | 29798750 |
| chr_2 | g8333 | g8333.t3 | cds | g8333.t3.CDS3 | 29798163 | 29798750 |
| chr_2 | g8333 | g8333.t3 | TTS | g8333.t3 | NA | NA |
Sequences
>g8333.t3 Gene=g8333 Length=1185
ATGAGCACTCGTGGAGCAGATGATGCTATAGGTAATTAAAATCAAATAATTTAAAGAACG
GAACTAAAATTTGGCGTAAATTATGTTGACCTTGAATTCTCTTACTTGCTTGCTCTCTCA
AAAGAGTGCAGATGTTAAAGAAAATACAAAAGGCAATTGATTGCGCGACTTTTAGTTTAT
TCTAATTGATAATAATGATATTGATTTAGTGCATTTACATTTTTAGAGCATCATCTTGTT
AATACAGACTCAAGTAGTGACATACATAAAGGTGCAAGTTCGACAAAAGGTGCATCAATC
AAGGAAGTATGTCTAATTATAGATTTAAACGAGACCCAAGAGAATTATCAACATCGAAAA
ATGGCTTACGAAGAAGTTAAACTTGCATGTCAATCAATTGCATCTAATTTGCAATTGGTA
CAATTTGGAAAACTTGATTTTGGCGATACAAGGACGGCTGATATATTTCATAGTGCTGAT
GTTGCCATTGTTGATCTTTCTTTACAACATCAACAAAGTGCCTTATCATATAATTTGGGT
CTTCGTGAAAGCTTTGAAATGAAAAATAATATTGTTCTTTTTAATGATTTAGATCAAGAA
GCTACATTGAGATTAAAAATATCAACTTCTAATTACACATTTTTACCATATCGTCTTTCT
GAAGAGAAAAATTCGTGCATCATTACAAATCCAGTAAAAAGGGAAGGAGGTGAAGATAAT
ATAGACAGTAGTAAGCAACAAACTCTTTATCAAAAGATGAAAAAAATTCTTCTTGATGTG
GAAATTCAGTCAAAAGCTCATTTGAAAGAAAAATTTTTGGCTGATTTGCGTGCAATAAGA
GAACTTAGTGAGATTGATGACCAAAAGGAAAAGCTTCGACATTTAAGAAAGCGTCTGGAC
GATCCGAATGTATTATCCGGAGAAGTATTTCAACAGTATATGTATTCGTTACGTGATGTA
CAAGACTATGATGCTATGGTGAATTTAATGAATGACTTACAGACTGTGCCAAGTACACAA
AAAGTTATGAATACAGGGCAAATGTCATATCTTTATGCATTTGCATTAAACCGTAGAAAT
AAAACAGGTGATCGTGATAAGGCTCTACAAACTTGTGTTAAAGCACTCGAAAAGAAGCAA
AATCATTTCCCTGATATGTTATGTTTATGTGGACGAATTTATAAA
>g8333.t3 Gene=g8333 Length=275
MAYEEVKLACQSIASNLQLVQFGKLDFGDTRTADIFHSADVAIVDLSLQHQQSALSYNLG
LRESFEMKNNIVLFNDLDQEATLRLKISTSNYTFLPYRLSEEKNSCIITNPVKREGGEDN
IDSSKQQTLYQKMKKILLDVEIQSKAHLKEKFLADLRAIRELSEIDDQKEKLRHLRKRLD
DPNVLSGEVFQQYMYSLRDVQDYDAMVNLMNDLQTVPSTQKVMNTGQMSYLYAFALNRRN
KTGDRDKALQTCVKALEKKQNHFPDMLCLCGRIYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g8333.t3 | Coils | Coil | Coil | 158 | 178 | - |
| 2 | g8333.t3 | PANTHER | PTHR11584 | SERINE/THREONINE PROTEIN KINASE | 5 | 275 | 2.8E-74 |
| 1 | g8333.t3 | Pfam | PF13281 | Domain of unknown function (DUF4071) | 55 | 275 | 5.6E-75 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed