General information for g8338.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8338 is located on chr_2: 29808168..29812008 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8338 | g8338.t2 | isoform | g8338.t2 | 29807801 | 29809361 |
| chr_2 | g8338 | g8338.t2 | exon | g8338.t2.exon1 | 29807801 | 29808081 |
| chr_2 | g8338 | g8338.t2 | exon | g8338.t2.exon2 | 29808235 | 29809361 |
| chr_2 | g8338 | g8338.t2 | cds | g8338.t2.CDS1 | 29808252 | 29809361 |
| chr_2 | g8338 | g8338.t2 | TSS | g8338.t2 | NA | NA |
| chr_2 | g8338 | g8338.t2 | TTS | g8338.t2 | NA | NA |
Sequences
>g8338.t2 Gene=g8338 Length=1408
TGAAGAATAAGATGAAAATATTAACTATTCAATGAAAGCATGAGGATTTGAAAGTGTGCG
AATATGATATAAAAATTTTTTATAGCAAATTGTAGGGTAATGAAAACTGAAATTTTCTAT
AAAAATAAAAAAATTTTAAGTTCCAAGTTGGCACCAATCAATTTTCGATAGGAATTTAGT
TAAATTAAACACTTTGTGGCCATTAAAATAAAATATATACTATGCTTAACAGTGACAAAT
AATAAAAGAAACAAGTGAAAATCAAGAAATTATCAGAAAAGGAATCCAAAAAAGGCCAAT
GTATCCTCAACAAACTCCTATGCCTATGGCTCAACCAATGATGAATGCAACTCAGCAATT
AACACAAATACAACCAAATCAGCAATTAAATTCGTTTCCTGGAGTTCAACAAAATATACA
ACAGCAACCTCAGTTACAACAGCATCCTAAAGAGAATCTTCAGCATGAAAACTTTTCACA
ACAGCAGCAATTGAGTTCAAGCATGAAAAATCTAACTCTTAATAATTCCAATTTCCCTCT
TCAAATGCCTTCATCAAAGAGTGATCAGAATTTATTAAACAATAATAATAATAATAGCAA
TGGTTTCACATTAGGAATACAGAAAAGACCAATGTATCCTCAACAAACTCCTTTGCCTAT
CGCTCAACCAATGATGAATCCAACTCCGACTCAATTTCAACAACAATTACAACCAAATCA
ACAGATTAATTCATTTCCTGGAGTTCAACAGCAACCTCTGTTACAACAGCAGCCTAGAGA
GAATCTTCAACATGAAAACTTTCCACAACAGCAGCCGCAAATGAGTGCAAGCATGAAAAA
TCTAACTCTTAATAATTCTGTTGTGCCCAATTTGCCTCTTCAAATGCCTTCATCAAAGAG
TGATCAGAATTTATTAAACAATAATAATAATGTGAAACCATTAGGAATGCAGAAAAGGCC
AATGTATCCTCAACAAATTCCTATGCCTATGGCTCAACCAATGATGAATGCAACTCAGCA
ACCGACTCAATTTCAACAACAATTACAACCAAATCAGCAGTTTAATTCATTTCCTGGAGT
TCAACAAAATATACAACAACAACCTAGAGGGAATCTTCAATACCAAAACTTTCCACAACA
GCCACAACAACAACCAAATGTTGTTCATCAAGGTTTTAATCAAATATGGGGAAGAGAGAC
CATTGATTTGATGCAAAATCGTCACATTTTGCCACAAACTAAAGTCACTCCACCACCGAT
TAAATTAAATCATCAATTTCATGAGGCAACAAATTGTAGCAGCGATATTTTTAGATGTAC
ATTGACTAAAATTCCAGAGTCAAATTCATTACTTCAAAAATCAAGATTACCATTAGGAAT
TCTCATTCATCCTTATAGAGATTTAAGT
>g8338.t2 Gene=g8338 Length=370
MYPQQTPMPMAQPMMNATQQLTQIQPNQQLNSFPGVQQNIQQQPQLQQHPKENLQHENFS
QQQQLSSSMKNLTLNNSNFPLQMPSSKSDQNLLNNNNNNSNGFTLGIQKRPMYPQQTPLP
IAQPMMNPTPTQFQQQLQPNQQINSFPGVQQQPLLQQQPRENLQHENFPQQQPQMSASMK
NLTLNNSVVPNLPLQMPSSKSDQNLLNNNNNVKPLGMQKRPMYPQQIPMPMAQPMMNATQ
QPTQFQQQLQPNQQFNSFPGVQQNIQQQPRGNLQYQNFPQQPQQQPNVVHQGFNQIWGRE
TIDLMQNRHILPQTKVTPPPIKLNHQFHEATNCSSDIFRCTLTKIPESNSLLQKSRLPLG
ILIHPYRDLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8338.t2 | Gene3D | G3DSA:2.60.40.1670 | - | 333 | 370 | 1.6E-6 |
| 4 | g8338.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 67 | - |
| 1 | g8338.t2 | PANTHER | PTHR13803 | SEC24-RELATED PROTEIN | 35 | 369 | 3.2E-15 |
| 2 | g8338.t2 | PANTHER | PTHR13803:SF42 | PROTEIN TRANSPORT PROTEIN SEC24B | 35 | 369 | 3.2E-15 |
| 3 | g8338.t2 | SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 216 | 369 | 7.59E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
