Gene loci information

Transcript annotation

  • This transcript has been annotated as MAP kinase-interacting serine/threonine-protein kinase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g836 g836.t10 TSS g836.t10 6378136 6378136
chr_3 g836 g836.t10 isoform g836.t10 6378139 6388215
chr_3 g836 g836.t10 exon g836.t10.exon1 6378139 6379121
chr_3 g836 g836.t10 cds g836.t10.CDS1 6379073 6379121
chr_3 g836 g836.t10 exon g836.t10.exon2 6379810 6380016
chr_3 g836 g836.t10 cds g836.t10.CDS2 6379810 6380016
chr_3 g836 g836.t10 exon g836.t10.exon3 6385831 6386342
chr_3 g836 g836.t10 cds g836.t10.CDS3 6385831 6386342
chr_3 g836 g836.t10 exon g836.t10.exon4 6387724 6387949
chr_3 g836 g836.t10 cds g836.t10.CDS4 6387724 6387949
chr_3 g836 g836.t10 exon g836.t10.exon5 6388014 6388215
chr_3 g836 g836.t10 cds g836.t10.CDS5 6388014 6388213
chr_3 g836 g836.t10 TTS g836.t10 NA NA

Sequences

>g836.t10 Gene=g836 Length=2130
TTTGTGAGAGAACATCGGAAAGGACAGACTGAGAAGTGAAATGGAGTGAATTGTTAAGTG
AAAAAAGAAAAACTCAAAGAAGTTTTTTTCTTTTTGATGAGAAAACATCGGCCTTTTGTG
TGTGTCTCGCTATAATAGCGTTCTAACAATCATCGGTTTTTAGTCCACACCATATTCATC
CCACTGTAAAGGAAAAGTTAAAAGTAATCGATTAAATCAGGCAGGAGAAAATAGATCTGG
AAGTTTTTTATTGATTTACAAAAAAAATCGGCCGAGAGAAGAAATACAAGGCAGTGAGAA
AGAGAAAGAAGAGCATCGAGAAAAAAAATCCAGTTTGGCTGAAAGTTTTTTTTCTCATTG
AATGTTTTTTATTTCTAAAAAGCTATAAAATTGCAAGCAAAGTGGCAAAAATTTCACTCG
GAAAGGAAAATTAAAAATTATCTTTTTTGCCCTGCAACAACAACCACAACACTCAACCCA
CAACAACAACAAATCATCTACGAATCGTTATATGCTAACTTTTTGTTAATTTAATTTTAA
CACAAATCAACCAAAAGAAAGAAAGATAGAAGGATCAACAGAAGTTGAATTGAATGAATG
CATAAAAAATCTCTTTAAGGTCACATTTTAAGAGAAGCCAGAAAATTAATTATAATTAAT
TAAATAAGCTTAAGAGAAAAGATAGCTTGAGTTAGTTTTGAAAATTTAAAAAAATTACAT
CTAATGCGAGAAGCAAGTAAAGTGAATATTCATGTGAGAGCTTAAAGTTAATCGAAAGAA
AAAAAATAATTTTTAATAAGTGAAATATTCTTCGGGAAAAGCAAGAATCTACGCAAAAGA
ATTGTTAAATTTATTCACCAAATTTGAAATAATAAAAAATAAGAAGTATTTTTTTCGTGT
TCGAGAGAGAGAGAGAAAAAAAAGATACACAAAAATGGTGGAAAAAATTTTAGAAGAAGA
GAAATCATCAGATACTAATTCAGAGAAGAGCTCTGAGCCTCGAACACCAGCAGAGGTTAC
TCGCTATAGCAGCGAAGAGATGAATTCCGGCAATGAGTCAAATGAAGTGCATTTATGGAC
CGAGCAGGAGCGACAAGCCGACTTTAATCGCCATAAGGAGGAATTGCTGAAACGCAAACG
CCGCCGCAAAAAACGTACTAGCTCATCAATTCAATCAAGTTGCTTTCAAGAACTGTATAA
ATTGACGGGCGAAATATTGGGAGAAGGTGCCTATGCCTCAGTACAAACCTGTATAAATAT
ATTCACCGATGTAGAGTGTGCCGTTAAAATTATTGATAAGATACCAGGCCATGCACGAGC
TCGAGTATTTCGTGAAGTAGAGACGTTCCATCATTGTCAGGGACATCCGAATATTCTCCA
ATTAATTGAGTTCTTTGAGGATAAGGAGAAATTCTATTTAGTATTTGAAAAGATCAATGG
TGGTCCGCTATTGACGCGTATACAAGAGAACATTTGCTTCTCAGAGCATGATGCAGCACA
AATAATTAAGGAAATAGCCTCAGGATTGAATTTTTTGCATAAGAAGGGCATAGCTCATCG
TGATTTGAAACCTGAAAATATTTTATGCGTTAATCCGGACACAATTTGTCCCATTAAAAT
ATGTGATTTTGATCTCGGCTCGGGAATTAATTTTACGACTGACGTTTCTGAATCAGTGGC
CACTCCGCAACTTCTGACACCGGTTGGTTCCGCTGAATTCATGGCTCCCGAAGTTGTCGA
CTTGTTTGTTGGCGAGCGCGAGAGCAGCTACGATAAAAGATGTGATTTGTGGTCAATGGG
TGTCATTGCATATATCTTACTGTCTGGCTATCCGCCATTCTCCGGCAATTGTGGTCAAGA
ATGTGGCTGGAATCGCGGTGAAAATTGTCAGAAATGTCAAGAGTTACTTTTTGAGTCAAT
TCGTGAAGGACGTTTTAGTTTTCCTGAAACCGAATGGCGTGACGTCAGCGAGGAGGCAAA
AGATTTGATTCGTAATTTATTGGTAAAGGAAGCATCAAAGCGACTATCAGCTGAGGCTGT
CTTAATTCATCCCTGGATCAAAGTCGCTGATGAAGATTGTGACAACGAAAAACGCTATCG
TGCGCTTAAAACTCCAGGGATCATTCGAAG

>g836.t10 Gene=g836 Length=398
MVEKILEEEKSSDTNSEKSSEPRTPAEVTRYSSEEMNSGNESNEVHLWTEQERQADFNRH
KEELLKRKRRRKKRTSSSIQSSCFQELYKLTGEILGEGAYASVQTCINIFTDVECAVKII
DKIPGHARARVFREVETFHHCQGHPNILQLIEFFEDKEKFYLVFEKINGGPLLTRIQENI
CFSEHDAAQIIKEIASGLNFLHKKGIAHRDLKPENILCVNPDTICPIKICDFDLGSGINF
TTDVSESVATPQLLTPVGSAEFMAPEVVDLFVGERESSYDKRCDLWSMGVIAYILLSGYP
PFSGNCGQECGWNRGENCQKCQELLFESIREGRFSFPETEWRDVSEEAKDLIRNLLVKEA
SKRLSAEAVLIHPWIKVADEDCDNEKRYRALKTPGIIR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g836.t10 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 75 166 1.7E-33
6 g836.t10 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 167 375 1.4E-58
10 g836.t10 MobiDBLite mobidb-lite consensus disorder prediction 1 46 -
12 g836.t10 MobiDBLite mobidb-lite consensus disorder prediction 1 17 -
11 g836.t10 MobiDBLite mobidb-lite consensus disorder prediction 18 45 -
2 g836.t10 PANTHER PTHR24349 SERINE/THREONINE-PROTEIN KINASE 66 378 3.2E-128
3 g836.t10 PANTHER PTHR24349:SF254 MAP KINASE-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2 66 378 3.2E-128
1 g836.t10 Pfam PF00069 Protein kinase domain 92 375 4.4E-65
8 g836.t10 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 95 118 -
7 g836.t10 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 206 218 -
13 g836.t10 ProSiteProfiles PS50011 Protein kinase domain profile. 89 375 43.693
9 g836.t10 SMART SM00220 serkin_6 89 375 1.6E-91
4 g836.t10 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 92 379 1.62E-71

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values