General information for g8368.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Methanethiol oxidase.
Parent gene
- The parent gene g8368 is located on chr_2: 30046517..30047745 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8368 | g8368.t17 | isoform | g8368.t17 | 30046517 | 30047402 |
| chr_2 | g8368 | g8368.t17 | exon | g8368.t17.exon1 | 30046517 | 30046869 |
| chr_2 | g8368 | g8368.t17 | cds | g8368.t17.CDS1 | 30046518 | 30046869 |
| chr_2 | g8368 | g8368.t17 | exon | g8368.t17.exon2 | 30046994 | 30047318 |
| chr_2 | g8368 | g8368.t17 | cds | g8368.t17.CDS2 | 30046994 | 30047318 |
| chr_2 | g8368 | g8368.t17 | exon | g8368.t17.exon3 | 30047390 | 30047402 |
| chr_2 | g8368 | g8368.t17 | cds | g8368.t17.CDS3 | 30047390 | 30047402 |
| chr_2 | g8368 | g8368.t17 | TSS | g8368.t17 | 30047454 | 30047454 |
| chr_2 | g8368 | g8368.t17 | TTS | g8368.t17 | NA | NA |
Sequences
>g8368.t17 Gene=g8368 Length=691
ATGGCTTGCAAAGAAGGAAATAAATGTGGAAAGGGACCAGGTTATCCCTCGCCAATGTGG
GCATTTAAAAATGGTCCTCGCGAGAAAATATTGTACGTTGCTACAGTTCAGCCTAATTTA
GAAGATGAGAGTGGAGATTATCTTAGTGTTGTTGACGTTGATCCTCAAAGCGAGACTTTT
TGTCAGGTAATTCATCGTGCGTATTCTGGAAATAAAGGCCAAGAATTTCACCACATAGGC
TGGAATACGTGCTCATCATGTCATTTTGTTGATGCCGCATGCACGGATATTCCCAGTAGA
GATAAACTCGTGTTGCCATGTTTGATATCTGATGCAGTTTATGTCTTCGATGTTGGACAC
GATCCAAAGCGTCCAACACTACATAAAATCATCGATGGTGAAGTTCTACGTAATAATGAT
GTTAGTGCGCCGCATACCGCACATTGTCTTCCTTCTGGCAATGTTATGATTTCTACAATG
GGCGATAAGGACGCGAATGCTAAGGGCGATTTTATTTTGTTTGATAAAAACTTTGATTGT
GTGGGAACTTGGACAGTAGGCGAGAAAGCACTTTGCGGCTACGATTATTGGTATCAGCCT
TACTTTAATGTATTGATTGCAAGTGAATGGGGAGCTCCTCGTCTTTTTAGAAGAGGCTTT
GATGCCGACGATTTGAAATCTGAACGTGACT
>g8368.t17 Gene=g8368 Length=230
MACKEGNKCGKGPGYPSPMWAFKNGPREKILYVATVQPNLEDESGDYLSVVDVDPQSETF
CQVIHRAYSGNKGQEFHHIGWNTCSSCHFVDAACTDIPSRDKLVLPCLISDAVYVFDVGH
DPKRPTLHKIIDGEVLRNNDVSAPHTAHCLPSGNVMISTMGDKDANAKGDFILFDKNFDC
VGTWTVGEKALCGYDYWYQPYFNVLIASEWGAPRLFRRGFDADDLKSERD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8368.t17 | PANTHER | PTHR23300 | METHANETHIOL OXIDASE | 9 | 203 | 0 |
| 1 | g8368.t17 | Pfam | PF05694 | 56kDa selenium binding protein (SBP56) | 10 | 227 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008430 | selenium binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
