General information for g8368.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Methanethiol oxidase.
Parent gene
- The parent gene g8368 is located on chr_2: 30046517..30047745 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8368 | g8368.t5 | TTS | g8368.t5 | 30045412 | 30045412 |
| chr_2 | g8368 | g8368.t5 | isoform | g8368.t5 | 30045539 | 30046869 |
| chr_2 | g8368 | g8368.t5 | exon | g8368.t5.exon1 | 30045539 | 30046233 |
| chr_2 | g8368 | g8368.t5 | cds | g8368.t5.CDS1 | 30045539 | 30046207 |
| chr_2 | g8368 | g8368.t5 | exon | g8368.t5.exon2 | 30046441 | 30046869 |
| chr_2 | g8368 | g8368.t5 | TSS | g8368.t5 | 30047454 | 30047454 |
Sequences
>g8368.t5 Gene=g8368 Length=1124
TTATGTCTTCGATGTTGGACACGATCCAAAGCGTCCAACACTACATAAAATCATCGATGG
TGAAGTTCTACGTAATAATGATGTTAGTGCGCCGCATACCGCACATTGTCTTCCTTCTGG
CAATGTTATGATTTCTACAATGGGCGATAAGGACGCGAATGCTAAGGGCGATTTTATTTT
GTTTGATAAAAACTTTGATTGTGTGGGAACTTGGACAGTAGGCGAGAAAGCACTTTGCGG
CTACGATTATTGGTATCAGCCTTACTTTAATGTATTGATTGCAAGTGAATGGGGAGCTCC
TCGTCTTTTTAGAAGAGGCTTTGATGCCGACGATTTGAAATCTGAACGTGACTATGGACG
ACGACTGAATGTTTACGCTTGGAATGAAAGAAAATTAATCGATACGATTGATCTAGGAGA
TGAAGGCAAGAATCGCCCCACTTGAAATTCGTTTCATGCATGATCCCAAAAGATGTGAAG
GCTTCGTTGGAGCTTCTCTATGTAGCAAAGTTTTTCGCTTCTATAAGAAAAACCCTACGG
ATGAAAAGTTTACTGTAGAAAAAGTTATAGATGTGCCAGTAAAAAAAGTTGAAGGATGGA
TTATGCCCGAAATGAATGGGTTGATGACCGATATTCTTCTTTCGTTGGATGATCGCTTCA
TTTATTTCAGCAATTGGTTTCATGGTGATGTCAGACAATATGACATTAGTGATCCAGCAA
ATCCAAAATTGACTGGTCAAATCTTTCTTGGTGGCATGCTTCTCAATGACTCGAAAGTAA
AAGTACTTGAAGATAAAGAGCTCAAAGAGCAACCTTCGCCAACATTTATCAAAGGAAGAA
GGCTCTATGGTGGACCGCAAATGCTGCAATTGAGTTTAGATGGTAAAAGACTTTATGTAA
GCTCATCTTTGTTTTCACCATGGGATAAGCAATTTTATCCTGACATGGTAAAGAATGGTG
GTACAATTGTACAAATCGATATTGATACAGTCAATGGTGGCATGAAATTGAACGAAGAAT
TCTTAGTTGATTTTGCTAACGAGCCTAATGGACCGGCACTTCCTCATGAAATGAGATATC
CCGGTGGAGATTGTACTTCTGATATTTGGCTTGCTGAAGATTAA
>g8368.t5 Gene=g8368 Length=222
MHDPKRCEGFVGASLCSKVFRFYKKNPTDEKFTVEKVIDVPVKKVEGWIMPEMNGLMTDI
LLSLDDRFIYFSNWFHGDVRQYDISDPANPKLTGQIFLGGMLLNDSKVKVLEDKELKEQP
SPTFIKGRRLYGGPQMLQLSLDGKRLYVSSSLFSPWDKQFYPDMVKNGGTIVQIDIDTVN
GGMKLNEEFLVDFANEPNGPALPHEMRYPGGDCTSDIWLAED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8368.t5 | PANTHER | PTHR23300:SF11 | SELENIUM-BINDING PROTEIN 1 | 1 | 219 | 0 |
| 3 | g8368.t5 | PANTHER | PTHR23300 | METHANETHIOL OXIDASE | 1 | 219 | 0 |
| 1 | g8368.t5 | Pfam | PF05694 | 56kDa selenium binding protein (SBP56) | 1 | 219 | 0 |
| 4 | g8368.t5 | SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 11 | 151 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008430 | selenium binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
