Gene loci information

Transcript annotation

  • This transcript has been annotated as Methanethiol oxidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8368 g8368.t6 TTS g8368.t6 30045412 30045412
chr_2 g8368 g8368.t6 isoform g8368.t6 30045539 30047318
chr_2 g8368 g8368.t6 exon g8368.t6.exon1 30045539 30046233
chr_2 g8368 g8368.t6 cds g8368.t6.CDS1 30045539 30046207
chr_2 g8368 g8368.t6 exon g8368.t6.exon2 30046447 30046869
chr_2 g8368 g8368.t6 exon g8368.t6.exon3 30046994 30047318
chr_2 g8368 g8368.t6 TSS g8368.t6 30047454 30047454

Sequences

>g8368.t6 Gene=g8368 Length=1443
AAGGAAATAAATGTGGAAAGGGACCAGGTTATCCCTCGCCAATGTGGGCATTTAAAAATG
GTCCTCGCGAGAAAATATTGTACGTTGCTACAGTTCAGCCTAATTTAGAAGATGAGAGTG
GAGATTATCTTAGTGTTGTTGACGTTGATCCTCAAAGCGAGACTTTTTGTCAGGTAATTC
ATCGTGCGTATTCTGGAAATAAAGGCCAAGAATTTCACCACATAGGCTGGAATACGTGCT
CATCATGTCATTTTGTTGATGCCGCATGCACGGATATTCCCAGTAGAGATAAACTCGTGT
TGCCATGTTTGATATCTGATGCAGTTTATGTCTTCGATGTTGGACACGATCCAAAGCGTC
CAACACTACATAAAATCATCGATGGTGAAGTTCTACGTAATAATGATGTTAGTGCGCCGC
ATACCGCACATTGTCTTCCTTCTGGCAATGTTATGATTTCTACAATGGGCGATAAGGACG
CGAATGCTAAGGGCGATTTTATTTTGTTTGATAAAAACTTTGATTGTGTGGGAACTTGGA
CAGTAGGCGAGAAAGCACTTTGCGGCTACGATTATTGGTATCAGCCTTACTTTAATGTAT
TGATTGCAAGTGAATGGGGAGCTCCTCGTCTTTTTAGAAGAGGCTTTGATGCCGACGATT
TGAAATCTGAACGTGACTATGGACGACGACTGAATGTTTACGCTTGGAATGAAAGAAAAT
TAATCGATACGATTGATCTAGGAGATGAGAATCGCCCCACTTGAAATTCGTTTCATGCAT
GATCCCAAAAGATGTGAAGGCTTCGTTGGAGCTTCTCTATGTAGCAAAGTTTTTCGCTTC
TATAAGAAAAACCCTACGGATGAAAAGTTTACTGTAGAAAAAGTTATAGATGTGCCAGTA
AAAAAAGTTGAAGGATGGATTATGCCCGAAATGAATGGGTTGATGACCGATATTCTTCTT
TCGTTGGATGATCGCTTCATTTATTTCAGCAATTGGTTTCATGGTGATGTCAGACAATAT
GACATTAGTGATCCAGCAAATCCAAAATTGACTGGTCAAATCTTTCTTGGTGGCATGCTT
CTCAATGACTCGAAAGTAAAAGTACTTGAAGATAAAGAGCTCAAAGAGCAACCTTCGCCA
ACATTTATCAAAGGAAGAAGGCTCTATGGTGGACCGCAAATGCTGCAATTGAGTTTAGAT
GGTAAAAGACTTTATGTAAGCTCATCTTTGTTTTCACCATGGGATAAGCAATTTTATCCT
GACATGGTAAAGAATGGTGGTACAATTGTACAAATCGATATTGATACAGTCAATGGTGGC
ATGAAATTGAACGAAGAATTCTTAGTTGATTTTGCTAACGAGCCTAATGGACCGGCACTT
CCTCATGAAATGAGATATCCCGGTGGAGATTGTACTTCTGATATTTGGCTTGCTGAAGAT
TAA

>g8368.t6 Gene=g8368 Length=222
MHDPKRCEGFVGASLCSKVFRFYKKNPTDEKFTVEKVIDVPVKKVEGWIMPEMNGLMTDI
LLSLDDRFIYFSNWFHGDVRQYDISDPANPKLTGQIFLGGMLLNDSKVKVLEDKELKEQP
SPTFIKGRRLYGGPQMLQLSLDGKRLYVSSSLFSPWDKQFYPDMVKNGGTIVQIDIDTVN
GGMKLNEEFLVDFANEPNGPALPHEMRYPGGDCTSDIWLAED

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g8368.t6 PANTHER PTHR23300:SF11 SELENIUM-BINDING PROTEIN 1 1 219 0
3 g8368.t6 PANTHER PTHR23300 METHANETHIOL OXIDASE 1 219 0
1 g8368.t6 Pfam PF05694 56kDa selenium binding protein (SBP56) 1 219 0
4 g8368.t6 SUPERFAMILY SSF75011 3-carboxy-cis,cis-mucoante lactonizing enzyme 11 151 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008430 selenium binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values