Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8387 g8387.t3 TTS g8387.t3 30133034 30133034
chr_2 g8387 g8387.t3 isoform g8387.t3 30133846 30134620
chr_2 g8387 g8387.t3 exon g8387.t3.exon1 30133846 30134177
chr_2 g8387 g8387.t3 cds g8387.t3.CDS1 30133847 30134177
chr_2 g8387 g8387.t3 exon g8387.t3.exon2 30134240 30134620
chr_2 g8387 g8387.t3 cds g8387.t3.CDS2 30134240 30134400
chr_2 g8387 g8387.t3 TSS g8387.t3 30134651 30134651

Sequences

>g8387.t3 Gene=g8387 Length=713
ATGTTTTATCAATTTCTTGCATTTTCTTTTCTTAAATTAATTTTTATACCATCATAGTGA
GTTAGAAATTATTAATGAAATAACAATATATTAAATTTCCACTTTTAGTCGCTCAACAGA
TTTCGAGGTTCATAGAAATTGGCTAGCGATTACACATTCATTAAATATTTCAAGTTGGTA
TTATGAAGATACATCTGAATGGACATTAGATTATCCACCAATGTTTGCATATTTTGAGTA
TGCACTGTCACACATTGCAAAGTACTTTGATCCAGAAATGCTCATTGTGAGCAACTTGAA
TTATGCTTCATACAACACAATTTTATTTCAAAGATTATCAGTAATATTTACTGACGTTAT
CTATTTTCTCGGTGTTCGAGAATGTTTAAAAAATGTGAATAAAAATCAAAAGGTTTTTCA
TTCAATTTTACTGCTTGGAAATATTGGATTAATTTTTGTGGATCACATTCATTTTCAATA
CAATGGAATATTATTTGGAATTCTTCTGCTTAGTTGTGGTAAAATTTTTCAACGAAAATA
TCTTCAAGCTGCATTTTACTACACATTATTGCTTAATATGAAGCATATTTACATCTACAT
TGCTCCAGTTTATTTCTTTTATCTCCTCAAATTCTACTGTAGTGGATCATTTAAACAATT
CATTAGTGGAGTTATAAAATTAGGTACAATAGTACTACTCGTAACAGCAGCAT

>g8387.t3 Gene=g8387 Length=164
MFAYFEYALSHIAKYFDPEMLIVSNLNYASYNTILFQRLSVIFTDVIYFLGVRECLKNVN
KNQKVFHSILLLGNIGLIFVDHIHFQYNGILFGILLLSCGKIFQRKYLQAAFYYTLLLNM
KHIYIYIAPVYFFYLLKFYCSGSFKQFISGVIKLGTIVLLVTAA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g8387.t3 PANTHER PTHR12413:SF2 DOLICHYL PYROPHOSPHATE GLC1MAN9GLCNAC2 ALPHA-1,3-GLUCOSYLTRANSFERASE-RELATED 1 163 4.2E-48
3 g8387.t3 PANTHER PTHR12413 DOLICHYL GLYCOSYLTRANSFERASE 1 163 4.2E-48
1 g8387.t3 Pfam PF03155 ALG6, ALG8 glycosyltransferase family 1 163 3.2E-47
12 g8387.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 33 -
15 g8387.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 34 52 -
8 g8387.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 53 63 -
14 g8387.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 64 80 -
10 g8387.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 81 85 -
13 g8387.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 86 104 -
7 g8387.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 105 110 -
17 g8387.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 111 134 -
11 g8387.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 135 145 -
16 g8387.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 146 163 -
9 g8387.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 164 164 -
4 g8387.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 34 52 -
6 g8387.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 65 87 -
5 g8387.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 122 144 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006490 oligosaccharide-lipid intermediate biosynthetic process BP
GO:0005783 endoplasmic reticulum CC
GO:0042283 dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity MF
GO:0016758 hexosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed