General information for g839.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exocyst complex component 5.
Parent gene
- The parent gene g839 is located on chr_3: 6410542..6412189 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g839 | g839.t2 | TSS | g839.t2 | 6408086 | 6408086 |
| chr_3 | g839 | g839.t2 | isoform | g839.t2 | 6408176 | 6408939 |
| chr_3 | g839 | g839.t2 | exon | g839.t2.exon1 | 6408176 | 6408634 |
| chr_3 | g839 | g839.t2 | cds | g839.t2.CDS1 | 6408176 | 6408634 |
| chr_3 | g839 | g839.t2 | exon | g839.t2.exon2 | 6408693 | 6408939 |
| chr_3 | g839 | g839.t2 | cds | g839.t2.CDS2 | 6408693 | 6408938 |
| chr_3 | g839 | g839.t2 | TTS | g839.t2 | NA | NA |
Sequences
>g839.t2 Gene=g839 Length=706
ATGTTTTCACAATATATGGAAGAACTTGAAAAGAATCCTTATTCAGTTGAGGATTTTGTG
GAAAAGTTATTTTGGCGAACAAACACAAATTGTGAAAATTTTGATCCTGAATTATTGACA
GAAACTTTCAATAACACGATAAAGGATTTAAAAATCCTTCAAGAACGTCAACAGCGAAAG
TGTGAAAAGCTCGAAGCTGCTTTAAGTGAAGAACAAAAGATCCATGCAAGAGATATTGAA
AAATTACTCGAACGTCACAGTATTTCTGTAGAATGTTTTCATAATTTAGACGAAAAAATC
AATTCAGTAGCAGGAAAAATAATTCATTTGGGAGAACAACTTGAAAATGTCAATACACCT
AGAACTAGAACAGCAGAAGCACTTAAATTATTAAATCATATGGGAGAATTTCTTGTTCAG
GGACCAGTTGTTAATGATATTTTTACAAATAAAGCAAATCTTTTAGAAGCAGCTGATATA
ATACAGAAGCTTTATTTAGTAGCTCAAGATCTTCCAGCTGATAAATTTGGAGCAGCGAAA
AAGAAAATTGAATCAAAATACGATGAAGTTGAAAGAAATTTGATAGAAGAGTTTGCAAGA
GCTCAAACAGAAGAAAACATTGATAAAATGAAAGAACTTGCAAAGATAATGTCTCAATTT
AAAGGCTATAATCAGTGTGTTGATGTCTATATTGAACAAAGTCAAG
>g839.t2 Gene=g839 Length=235
MFSQYMEELEKNPYSVEDFVEKLFWRTNTNCENFDPELLTETFNNTIKDLKILQERQQRK
CEKLEAALSEEQKIHARDIEKLLERHSISVECFHNLDEKINSVAGKIIHLGEQLENVNTP
RTRTAEALKLLNHMGEFLVQGPVVNDIFTNKANLLEAADIIQKLYLVAQDLPADKFGAAK
KKIESKYDEVERNLIEEFARAQTEENIDKMKELAKIMSQFKGYNQCVDVYIEQSQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g839.t2 | Coils | Coil | Coil | 47 | 74 | - |
| 5 | g839.t2 | Coils | Coil | Coil | 173 | 200 | - |
| 2 | g839.t2 | PANTHER | PTHR12100:SF4 | EXOCYST COMPLEX COMPONENT 5 | 8 | 234 | 1.9E-58 |
| 3 | g839.t2 | PANTHER | PTHR12100 | SEC10 | 8 | 234 | 1.9E-58 |
| 1 | g839.t2 | Pfam | PF07393 | Exocyst complex component Sec10 | 90 | 235 | 2.0E-36 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0005737 | cytoplasm | CC |
| GO:0006887 | exocytosis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
