General information for g8391.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been not been annotated.
Parent gene
- The parent gene g8391 is located on chr_2: 30140425..30140893 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8391 | g8391.t1 | TSS | g8391.t1 | 30140355 | 30140355 |
| chr_2 | g8391 | g8391.t1 | isoform | g8391.t1 | 30140425 | 30140893 |
| chr_2 | g8391 | g8391.t1 | exon | g8391.t1.exon1 | 30140425 | 30140571 |
| chr_2 | g8391 | g8391.t1 | cds | g8391.t1.CDS1 | 30140425 | 30140571 |
| chr_2 | g8391 | g8391.t1 | exon | g8391.t1.exon2 | 30140777 | 30140893 |
| chr_2 | g8391 | g8391.t1 | cds | g8391.t1.CDS2 | 30140777 | 30140893 |
| chr_2 | g8391 | g8391.t1 | TTS | g8391.t1 | 30140942 | 30140942 |
Sequences
>g8391.t1 Gene=g8391 Length=264
ATGAAGCATTTAAAATTTCTATCAAGAACAGTGTTTGTAAATAACAATAACGTAGAAGAA
GCATGCCGTGTACTTAATAGAGTCTTAGGAAAAGAGGAAATATTTGATCAATATCGCAGA
ACTCGATATTATGAAAAACCTTTTCAGGTCCGTCGTCGAATCAATTTTGAAAAATGTAAA
GCAATTTACAATGAAGATATGGACAGAAAAATTCAATTCATTTTGAGGAAAAATCGAACT
GAACCTTTTCCTGGGCAATATTAA
>g8391.t1 Gene=g8391 Length=87
MKHLKFLSRTVFVNNNNVEEACRVLNRVLGKEEIFDQYRRTRYYEKPFQVRRRINFEKCK
AIYNEDMDRKIQFILRKNRTEPFPGQY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8391.t1 | PANTHER | PTHR21109:SF13 | 28S RIBOSOMAL PROTEIN S21, MITOCHONDRIAL | 2 | 84 | 0 |
| 3 | g8391.t1 | PANTHER | PTHR21109 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 | 2 | 84 | 0 |
| 1 | g8391.t1 | Pfam | PF01165 | Ribosomal protein S21 | 10 | 62 | 0 |
| 4 | g8391.t1 | TIGRFAM | TIGR00030 | S21p: ribosomal protein bS21 | 10 | 64 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005840 | ribosome | CC |
| GO:0006412 | translation | BP |
| GO:0003735 | structural constituent of ribosome | MF |
KEGG
Orthology
- This transcript has been annotated with K02970 (small subunit ribosomal protein S21)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
