General information for g8418.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Inositol polyphosphate multikinase.
Parent gene
- The parent gene g8418 is located on chr_2: 30358044..30362659 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8418 | g8418.t2 | TTS | g8418.t2 | 30352873 | 30352873 |
| chr_2 | g8418 | g8418.t2 | isoform | g8418.t2 | 30358044 | 30362659 |
| chr_2 | g8418 | g8418.t2 | exon | g8418.t2.exon1 | 30358044 | 30358749 |
| chr_2 | g8418 | g8418.t2 | cds | g8418.t2.CDS1 | 30358045 | 30358749 |
| chr_2 | g8418 | g8418.t2 | TSS | g8418.t2 | 30358811 | 30358811 |
| chr_2 | g8418 | g8418.t2 | exon | g8418.t2.exon2 | 30362321 | 30362659 |
Sequences
>g8418.t2 Gene=g8418 Length=1045
AGTGTGATTTCTGAACGCAGTAAATAAAGTTGTATTGATGAGTTATTAAGAAAAATAAAA
TTTTCTCGTGAGTAAAATTTTCGCAGAATAATAAAACAAAGTTTGTGTAACAAGATACTT
AATTAGAATTAATCATCTAATTAAAGTGCAATCAAGTGATCTCTCAACAGCAGCATTGTT
ATAAAATCTAAAAATTCTTGTTTATTTTAATTATTAAGTAAATTTATAAATATTTATTCA
TCTTAAACTTGCTCATAAGAATCAAGTTTCAAAATTTTTTGTCATTGAAAGAATAGGAAG
TGAATAAATTAATATTTTGAAAGATGATCCATAAAATGGATGAGTAATTTGAAATTGCCT
TCACAATTGCCACCTTATCAAAAGCAACGTCATAAGAGTTATGCTGGATTAGGTGGAGTA
AACGCTTCAGCAGCTACTTCACCCACATCAAATTTTTCCACCTCTTTTCAATTAGTCGTG
ACTGCGCCGACATCGTCAGCAATTGCTAATCTTTCAGCCATGAACAACGGTGCAAATCAA
AAAATTCCCGATGGTTTTACATCGATGGATCATCAAGTGGCCGGTCATACATTTCATGTC
GGAACCGACGAGATTGGAATGCTTAAATCAAACGATGATGGCAGCGTACTTAAACCTGCT
GGCTCACCAATGTGTGCAGCACGTGAAATAAAATTTTACGAACAATTGCTGACGACAACT
GATAAAGATATACTTCCTTTACGTGATTTCACCGCTGAATATCGTGGCACACAAACATTA
AATGTAGGAACCAAGACAGTCAACTTTATTAAATTACGTGATTTGACACATGGCATGCTG
GAGCCCTGTGTTATCGATATTAAAATAGGCAGGCGTACTTGGGATCCATTGGCTACTGAA
CAAAAACGTGAAGCAGAAGAAAGCAAATATCAAATGTGCAAAAATACTGTTGGATTTTGC
ATTCCAGGATTTCAAACTTTTCATATTGCGAGTGGAACATATAAAAAGTTTGGCAAAGAA
TATGGAAAGAAGTTGAATCAAAATA
>g8418.t2 Gene=g8418 Length=235
MSNLKLPSQLPPYQKQRHKSYAGLGGVNASAATSPTSNFSTSFQLVVTAPTSSAIANLSA
MNNGANQKIPDGFTSMDHQVAGHTFHVGTDEIGMLKSNDDGSVLKPAGSPMCAAREIKFY
EQLLTTTDKDILPLRDFTAEYRGTQTLNVGTKTVNFIKLRDLTHGMLEPCVIDIKIGRRT
WDPLATEQKREAEESKYQMCKNTVGFCIPGFQTFHIASGTYKKFGKEYGKKLNQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8418.t2 | Gene3D | G3DSA:1.10.510.50 | - | 114 | 235 | 0 |
| 2 | g8418.t2 | PANTHER | PTHR12400:SF51 | INOSITOL POLYPHOSPHATE MULTIKINASE | 68 | 234 | 0 |
| 3 | g8418.t2 | PANTHER | PTHR12400 | INOSITOL POLYPHOSPHATE KINASE | 68 | 234 | 0 |
| 1 | g8418.t2 | Pfam | PF03770 | Inositol polyphosphate kinase | 156 | 234 | 0 |
| 4 | g8418.t2 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 77 | 233 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016301 | kinase activity | MF |
| GO:0032958 | inositol phosphate biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K00915 (inositol-polyphosphate multikinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
