General information for g843.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Formylglycine-generating enzyme.
Parent gene
- The parent gene g843 is located on chr_3: 6426321..6427382 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g843 | g843.t1 | TTS | g843.t1 | 6426289 | 6426289 |
| chr_3 | g843 | g843.t1 | isoform | g843.t1 | 6426321 | 6427382 |
| chr_3 | g843 | g843.t1 | exon | g843.t1.exon1 | 6426321 | 6426880 |
| chr_3 | g843 | g843.t1 | cds | g843.t1.CDS1 | 6426321 | 6426880 |
| chr_3 | g843 | g843.t1 | exon | g843.t1.exon2 | 6426938 | 6427382 |
| chr_3 | g843 | g843.t1 | cds | g843.t1.CDS2 | 6426938 | 6427382 |
| chr_3 | g843 | g843.t1 | TSS | g843.t1 | 6427471 | 6427471 |
Sequences
>g843.t1 Gene=g843 Length=1005
ATGCTTGCAAGAAGCAGCTTGTATATTATTTTGTCATTTTTAAGTATTTTAGCTGAAATT
AATGCAGATTGTGGTTGTTCTCAAACATCAAGGGAAGAGAGAGCTAAGAAATATGAAAGA
TCTATAGATGAGAATGAATTTGAAAAAGTTCATAAATGGACAGATGCAAAAGATTACGAT
AACATGTCATTAATACCTAAAGGAAAATATACAATAGGCACAAATGATCAAGTGTTTAGA
GCAGATAAAGAAGGTCCTGAACGTGAGGTAGAAATTGAACAATTTTATATTGACAAATAT
GAAGTGTCAAATGAAGAATTTGAAAAATTCGTAAAAACAACCAATTATGAGACAGAGGCT
GAAAAATTTGGAGACAGTTTTGTGTTCAAAATATTTTTAGATGAAGACACACAAAAGAAA
AATGAAGACTTTCGTGTGTTGCAAGCACCATGGTGGTATAAAATAAAAGAAACAAATTGG
AGACAACCAGAAGGTCCGGGATCAAATATTAAAGATCGAATGAATCATCCAGTATTACAT
GTATCATATAATGATGCAACAGCTTTTTGCAAATGGAAAAATAAAAGACTGCCAACTGAA
GTTGAATGGGAAGTTGCTTGTCGTGGAGGACGAAAAGGTAGACTCTTTCCATGGGGAAAT
AAAGAAATGCCGAAAAATGAACATTGGATGAATATCTGGCATGGTGATGGTTTCCCTAAT
GAAAATCGTGCAGACGATGGTTTTGTAGGCACATGTCCAGTTGATAAATTTAGACAAAAC
GATTATGATCTTTATAATATTATTGGCAATGCATGGGAATGGACAAGTGATTTGTGGGAT
AAAAATCAAGTCAACAGTGAAAATCCAGAAAGAGTTAAAAAGGGAGGCAGCTTTTTGTGT
CATAAATCTTATTGTTATAGATACAGATGCGCTGCTCGATCACAAAACACACAAGACTCT
TCTTCAGGCAACCTTTCATTCCGATGTGCAAAAGACTTTGAATAA
>g843.t1 Gene=g843 Length=334
MLARSSLYIILSFLSILAEINADCGCSQTSREERAKKYERSIDENEFEKVHKWTDAKDYD
NMSLIPKGKYTIGTNDQVFRADKEGPEREVEIEQFYIDKYEVSNEEFEKFVKTTNYETEA
EKFGDSFVFKIFLDEDTQKKNEDFRVLQAPWWYKIKETNWRQPEGPGSNIKDRMNHPVLH
VSYNDATAFCKWKNKRLPTEVEWEVACRGGRKGRLFPWGNKEMPKNEHWMNIWHGDGFPN
ENRADDGFVGTCPVDKFRQNDYDLYNIIGNAWEWTSDLWDKNQVNSENPERVKKGGSFLC
HKSYCYRYRCAARSQNTQDSSSGNLSFRCAKDFE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g843.t1 | Gene3D | G3DSA:3.90.1580.10 | - | 45 | 334 | 4.7E-102 |
| 2 | g843.t1 | PANTHER | PTHR23150:SF19 | FORMYLGLYCINE-GENERATING ENZYME | 19 | 332 | 1.9E-133 |
| 3 | g843.t1 | PANTHER | PTHR23150 | SULFATASE MODIFYING FACTOR 1, 2 | 19 | 332 | 1.9E-133 |
| 1 | g843.t1 | Pfam | PF03781 | Sulfatase-modifying factor enzyme 1 | 59 | 331 | 2.2E-78 |
| 9 | g843.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 10 | g843.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 11 | g843.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 17 | - |
| 12 | g843.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 22 | - |
| 8 | g843.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 334 | - |
| 4 | g843.t1 | SUPERFAMILY | SSF56436 | C-type lectin-like | 61 | 332 | 7.06E-83 |
| 6 | g843.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 22 | - |
| 5 | g843.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 22 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K13444 (formylglycine-generating enzyme)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
