General information for g843.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g843 is located on chr_3: 6426321..6427382 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g843 | g843.t10 | TTS | g843.t10 | 6423969 | 6423969 |
| chr_3 | g843 | g843.t10 | isoform | g843.t10 | 6424873 | 6426321 |
| chr_3 | g843 | g843.t10 | exon | g843.t10.exon1 | 6424873 | 6425703 |
| chr_3 | g843 | g843.t10 | cds | g843.t10.CDS1 | 6425420 | 6425703 |
| chr_3 | g843 | g843.t10 | exon | g843.t10.exon2 | 6425755 | 6426321 |
| chr_3 | g843 | g843.t10 | cds | g843.t10.CDS2 | 6425755 | 6425845 |
| chr_3 | g843 | g843.t10 | TSS | g843.t10 | NA | NA |
Sequences
>g843.t10 Gene=g843 Length=1398
AAATATTACAGGAAAATAATTCCACGTGCTTTATTGTTTGAAAATAATTCTTTTTTTTTA
AACTTTTAAAGTAGAAATAAAATTGATAACAGAAACAAAAGACAAGTAAAAAAAAACAAA
ATTAATACTCAATTAAATTGAATGTATAATGTCAAAAAAGGAATAGACGATAATATGATA
TAAAATATTAATAGTAACGAGCTTTTAGAAAATTCGTTTAATATAAGGCGCTGTTAATCG
ATATATCCCATAGCCCACTGCTGCCCATGTTCCATATTTAACTGTTGCCCCAAAAATTCT
TATACTGAGTGGTGCTTTAGGAATTACCATAATATCTGGAATCTCTTGTGCAATTCCTCT
TTTGGATTCCCAGTTTTTTTTTACACCTGCAACATGTCCAATACCCATAACTCCTACTAC
ATTAAAAGGTTCAAGTGGCCGTTTGAGTTGTTCTAATTGATGCTTTGAATGCAAAGATGC
AAGTTGAAGACTATAACATAGATATAAATCGCGTTCATCGACAAACACTTTTCCAAAATT
GGGAAATTCACCAGCCATCTCTGAATTCTTTCATCAATTCTTCAAGTAAATCTTTTTGTT
TGCACTGCTCAACTTCTTCTTTTGTAATATTTTCATCAAATGTTAATAATTTCCATACAA
GTTTAAAAGTTTGCCATAAACTCAAACTTTTAAGACCGCGTTGTAATGTAATTCCTATTG
GACGATCGCCTAAGTGGACACGACAATTAGGAATTTTTTCTGCTTCTTTCATTGCTGTGC
GAAATTCTCCACCTGGAGCCATGCCCAATTCTTTAGTTAACTTTGCGCTCATATTGAGAA
GCAGAATATAAAACATTCCGTTAAAAAAGCCATTTGTTTTGATTACGCTCCTTATTTTTT
GCATATTAACATCTTTTGCTTCCTCCAACAATTTCTTTTCATCAAATTTTAATATATGAA
CACGACTTTCACATAATTCGACAACTACACTACTCGGACGGACATTTCGTATAACATTTG
CCACATCTCTATTGCTTTCAACTGAGAAATGAGCTGTTCCGACTAAATACACATTTACGT
TATTACTCATTTTTAACAACGTTACCGTCTGTGGTAAATTTTTATTAAATTCTTCGATTG
AATCGTAAATTTTGATATCTCTAAAGTCATTCGGTTCATCTGGGATGATTTCAATGTTGA
TTTGTCCATTAGAATCGAGCACCAATTCATTATCACTACTAGAAGACATAATATTTCGAG
CAGTCTTAAAGTTATCAACTAACAAACACGAAAATTATTCTAAAACGCAAAAGAGAAAGA
AAGGGTAAAGATTATAACGTGTCAAAAATTCATAAAACCACTGGCAAGACTTACACAAAT
TCTTAATTTTTGTTCAGT
>g843.t10 Gene=g843 Length=124
MQVEDYNIDINRVHRQTLFQNWEIHQPSLNSFINSSSKSFCLHCSTSSFVIFSSNVNNFH
TSLKVCHKLKLLRPRCNVIPIGRSPKWTRQLGIFSASFIAVRNSPPGAMPNSLVNFALIL
RSRI
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
