General information for g843.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g843 is located on chr_3: 6426321..6427382 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g843 | g843.t18 | TTS | g843.t18 | 6423969 | 6423969 |
| chr_3 | g843 | g843.t18 | isoform | g843.t18 | 6424878 | 6426321 |
| chr_3 | g843 | g843.t18 | exon | g843.t18.exon1 | 6424878 | 6424896 |
| chr_3 | g843 | g843.t18 | exon | g843.t18.exon2 | 6424972 | 6425701 |
| chr_3 | g843 | g843.t18 | cds | g843.t18.CDS1 | 6425420 | 6425701 |
| chr_3 | g843 | g843.t18 | exon | g843.t18.exon3 | 6425762 | 6426321 |
| chr_3 | g843 | g843.t18 | cds | g843.t18.CDS2 | 6425762 | 6425845 |
| chr_3 | g843 | g843.t18 | TSS | g843.t18 | NA | NA |
Sequences
>g843.t18 Gene=g843 Length=1309
AAATATTACAGGAAAATAATTCCACGTGCTTTATTGTTTGAAAATAATTCTTTTTTTTTA
AACTTTTAAAGTAGAAATAAAATTGATAACAGAAACAAAAGACAAGTAAAAAAAAACAAA
ATTAATACTCAATTAAATTGAATGTATAATGTCAAAAAAGGAATAGACGATAATATGATA
TAAAATATTAATAGTAACGAGCTTTTAGAAAATTCGTTTAATATAAGGCGCTGTTAATCG
ATATATCCCATAGCCCACTGCTGCCCATGTTCCATATTTAACTGTTGCCCCAAAAATTCT
TATACTGAGTGGTGCTTTAGGAATTACCATAATATCTGGAATCTCTTGTGCAATTCCTCT
TTTGGATTCCCAGTTTTTTTTTACACCTGCAACATGTCCAATACCCATAACTCCTACTAC
ATTAAAAGGTTCAAGTGGCCGTTTGAGTTGTTCTAATTGATGCTTTGAATGCAAAGATGC
AAGTTGAAGACTATAACATAGATATAAATCGCGTTCATCGACAAACACTTTTCCAAAATT
GGGAAATTCACCAGCCATCTTTCATCAATTCTTCAAGTAAATCTTTTTGTTTGCACTGCT
CAACTTCTTCTTTTGTAATATTTTCATCAAATGTTAATAATTTCCATACAAGTTTAAAAG
TTTGCCATAAACTCAAACTTTTAAGACCGCGTTGTAATGTAATTCCTATTGGACGATCGC
CTAAGTGGACACGACAATTAGGAATTTTTTCTGCTTCTTTCATTGCTGTGCGAAATTCTC
CACCTGGAGCCATGCCCAATTCTTTAGTTAACTTTGCGCTCATATTGAGAAGCAGAATAT
AAAACATTCCGTTAAAAAAGCCATTTGTTTTGATTACGCTCCTTATTTTTTGCATATTAA
CATCTTTTGCTTCCTCCAACAATTTCTTTTCATCAAATTTTAATATATGAACACGACTTT
CACATAATTCGACAACTACACTACTCGGACGGACATTTCGTATAACATTTGCCACATCTC
TATTGCTTTCAACTGAGAAATGAGCTGTTCCGACTAAATACACATTTACGTTATTACTCA
TTTTTAACAACGTTACCGTCTGTGGTAAATTTTTATTAAATTCTTCGATTGAATCGTAAA
TTTTGATATCTCTAAAGTCATTCGGTTCATCTGGGATGATTTCAATGTTGATTTGTCCAT
TAGAATCGAGCACCAATTCATTATCACTACTAGAAGACATAATATTTCGAGCAGTCTTAA
AGTTATCAACTAACAAACACGAAAATTATTACAAATTCTTAATTTTTGT
>g843.t18 Gene=g843 Length=121
MQVEDYNIDINRVHRQTLFQNWEIHQPSFINSSSKSFCLHCSTSSFVIFSSNVNNFHTSL
KVCHKLKLLRPRCNVIPIGRSPKWTRQLGIFSASFIAVRNSPPGAMPNSLVNFALILRSR
I
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
