General information for g843.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g843 is located on chr_3: 6426321..6427382 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g843 | g843.t19 | TTS | g843.t19 | 6423969 | 6423969 |
| chr_3 | g843 | g843.t19 | isoform | g843.t19 | 6424878 | 6426321 |
| chr_3 | g843 | g843.t19 | exon | g843.t19.exon1 | 6424878 | 6424896 |
| chr_3 | g843 | g843.t19 | exon | g843.t19.exon2 | 6424973 | 6425703 |
| chr_3 | g843 | g843.t19 | cds | g843.t19.CDS1 | 6425420 | 6425703 |
| chr_3 | g843 | g843.t19 | exon | g843.t19.exon3 | 6425761 | 6426321 |
| chr_3 | g843 | g843.t19 | cds | g843.t19.CDS2 | 6425761 | 6425845 |
| chr_3 | g843 | g843.t19 | TSS | g843.t19 | NA | NA |
Sequences
>g843.t19 Gene=g843 Length=1311
AAATATTACAGGAAAATAATTCCACGTGCTTTATTGTTTGAAAATAATTCTTTTTTTTTA
AACTTTTAAAGTAGAAATAAAATTGATAACAGAAACAAAAGACAAGTAAAAAAAAACAAA
ATTAATACTCAATTAAATTGAATGTATAATGTCAAAAAAGGAATAGACGATAATATGATA
TAAAATATTAATAGTAACGAGCTTTTAGAAAATTCGTTTAATATAAGGCGCTGTTAATCG
ATATATCCCATAGCCCACTGCTGCCCATGTTCCATATTTAACTGTTGCCCCAAAAATTCT
TATACTGAGTGGTGCTTTAGGAATTACCATAATATCTGGAATCTCTTGTGCAATTCCTCT
TTTGGATTCCCAGTTTTTTTTTACACCTGCAACATGTCCAATACCCATAACTCCTACTAC
ATTAAAAGGTTCAAGTGGCCGTTTGAGTTGTTCTAATTGATGCTTTGAATGCAAAGATGC
AAGTTGAAGACTATAACATAGATATAAATCGCGTTCATCGACAAACACTTTTCCAAAATT
GGGAAATTCACCAGCCATCTCCTTTCATCAATTCTTCAAGTAAATCTTTTTGTTTGCACT
GCTCAACTTCTTCTTTTGTAATATTTTCATCAAATGTTAATAATTTCCATACAAGTTTAA
AAGTTTGCCATAAACTCAAACTTTTAAGACCGCGTTGTAATGTAATTCCTATTGGACGAT
CGCCTAAGTGGACACGACAATTAGGAATTTTTTCTGCTTCTTTCATTGCTGTGCGAAATT
CTCCACCTGGAGCCATGCCCAATTCTTTAGTTAACTTTGCGCTCATATTGAGAAGCAGAA
TATAAAACATTCCGTTAAAAAAGCCATTTGTTTTGATTACGCTCCTTATTTTTTGCATAT
TAACATCTTTTGCTTCCTCCAACAATTTCTTTTCATCAAATTTTAATATATGAACACGAC
TTTCACATAATTCGACAACTACACTACTCGGACGGACATTTCGTATAACATTTGCCACAT
CTCTATTGCTTTCAACTGAGAAATGAGCTGTTCCGACTAAATACACATTTACGTTATTAC
TCATTTTTAACAACGTTACCGTCTGTGGTAAATTTTTATTAAATTCTTCGATTGAATCGT
AAATTTTGATATCTCTAAAGTCATTCGGTTCATCTGGGATGATTTCAATGTTGATTTGTC
CATTAGAATCGAGCACCAATTCATTATCACTACTAGAAGACATAATATTTCGAGCAGTCT
TAAAGTTATCAACTAACAAACACGAAAATTATACAAATTCTTAATTTTTGT
>g843.t19 Gene=g843 Length=122
MQVEDYNIDINRVHRQTLFQNWEIHQPSPFINSSSKSFCLHCSTSSFVIFSSNVNNFHTS
LKVCHKLKLLRPRCNVIPIGRSPKWTRQLGIFSASFIAVRNSPPGAMPNSLVNFALILRS
RI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g843.t19 | Coils | Coil | Coil | 122 | 122 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
