Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g843 g843.t27 TTS g843.t27 6423969 6423969
chr_3 g843 g843.t27 isoform g843.t27 6424983 6426321
chr_3 g843 g843.t27 exon g843.t27.exon1 6424983 6425700
chr_3 g843 g843.t27 cds g843.t27.CDS1 6425420 6425700
chr_3 g843 g843.t27 exon g843.t27.exon2 6425755 6426321
chr_3 g843 g843.t27 cds g843.t27.CDS2 6425755 6425845
chr_3 g843 g843.t27 TSS g843.t27 NA NA

Sequences

>g843.t27 Gene=g843 Length=1285
AAATATTACAGGAAAATAATTCCACGTGCTTTATTGTTTGAAAATAATTCTTTTTTTTTA
AACTTTTAAAGTAGAAATAAAATTGATAACAGAAACAAAAGACAAGTAAAAAAAAACAAA
ATTAATACTCAATTAAATTGAATGTATAATGTCAAAAAAGGAATAGACGATAATATGATA
TAAAATATTAATAGTAACGAGCTTTTAGAAAATTCGTTTAATATAAGGCGCTGTTAATCG
ATATATCCCATAGCCCACTGCTGCCCATGTTCCATATTTAACTGTTGCCCCAAAAATTCT
TATACTGAGTGGTGCTTTAGGAATTACCATAATATCTGGAATCTCTTGTGCAATTCCTCT
TTTGGATTCCCAGTTTTTTTTTACACCTGCAACATGTCCAATACCCATAACTCCTACTAC
ATTAAAAGGTTCAAGTGGCCGTTTGAGTTGTTCTAATTGATGCTTTGAATGCAAAGATGC
AAGTTGAAGACTATAACATAGATATAAATCGCGTTCATCGACAAACACTTTTCCAAAATT
GGGAAATTCACCAGCCATCTCTGAATTTCATCAATTCTTCAAGTAAATCTTTTTGTTTGC
ACTGCTCAACTTCTTCTTTTGTAATATTTTCATCAAATGTTAATAATTTCCATACAAGTT
TAAAAGTTTGCCATAAACTCAAACTTTTAAGACCGCGTTGTAATGTAATTCCTATTGGAC
GATCGCCTAAGTGGACACGACAATTAGGAATTTTTTCTGCTTCTTTCATTGCTGTGCGAA
ATTCTCCACCTGGAGCCATGCCCAATTCTTTAGTTAACTTTGCGCTCATATTGAGAAGCA
GAATATAAAACATTCCGTTAAAAAAGCCATTTGTTTTGATTACGCTCCTTATTTTTTGCA
TATTAACATCTTTTGCTTCCTCCAACAATTTCTTTTCATCAAATTTTAATATATGAACAC
GACTTTCACATAATTCGACAACTACACTACTCGGACGGACATTTCGTATAACATTTGCCA
CATCTCTATTGCTTTCAACTGAGAAATGAGCTGTTCCGACTAAATACACATTTACGTTAT
TACTCATTTTTAACAACGTTACCGTCTGTGGTAAATTTTTATTAAATTCTTCGATTGAAT
CGTAAATTTTGATATCTCTAAAGTCATTCGGTTCATCTGGGATGATTTCAATGTTGATTT
GTCCATTAGAATCGAGCACCAATTCATTATCACTACTAGAAGACATAATATTTCGAGCAG
TCTTAAAGTTATCAACTAACAAACA

>g843.t27 Gene=g843 Length=123
MQVEDYNIDINRVHRQTLFQNWEIHQPSLNFINSSSKSFCLHCSTSSFVIFSSNVNNFHT
SLKVCHKLKLLRPRCNVIPIGRSPKWTRQLGIFSASFIAVRNSPPGAMPNSLVNFALILR
SRI

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed