Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8445 g8445.t2 TSS g8445.t2 30582318 30582318
chr_2 g8445 g8445.t2 isoform g8445.t2 30583135 30584016
chr_2 g8445 g8445.t2 exon g8445.t2.exon1 30583135 30584016
chr_2 g8445 g8445.t2 cds g8445.t2.CDS1 30583250 30583462
chr_2 g8445 g8445.t2 TTS g8445.t2 30584017 30584017

Sequences

>g8445.t2 Gene=g8445 Length=882
TGAAGATCGCGTAAGAAATCTCGAACAGGAAGTTAAAAAAGTTGCGAAATTTCTAGAAAA
AGACTATAGTCAAGAAAAAATTGAGGACCTTTGTAAGCATTTAACATTTGATTCAATGCA
AAAGAATCCATCATGTAATAATGAACATATGACGAAAATGCTTAAAGAAAATTTTGATTT
TGAATCAAAACACGAAAAATTCAATTTTATTCGAGAAGGAAAAATTGGAAGTTACAAGAA
AGAAATGGATGAAGAAGAAATCAAGAAAGTTGAAAAATATATGGACTATCCTGATTTTGA
GAACTATGGATTTGAATATAAGTTTTAAAGTTATAAAAAATTGTCAAATAATAGTGTTCG
GCACTTGCATACTTACATTTTAATTTGTAACAAATTGAAGAAATTTCAATGTATTGCAGT
TAGGTTGAAATCAACTTGATAAAAATATGCGCTTATAATACTTGATATAAAAATATATCA
AGTAAAATATTCATGCAAGTCTGAACCCTATGATTTATTTAAAAAGATTGTCAATTTCAT
TCAAATCTTATTTTATAGAAACTTCTTATAATTTCACCAATTTAAATAAAATTTGAATAG
ACAAATTTTTAAACAAATCAACTTGAAAGCAGCTTGTAAAAGTGTCGACGTGCAAGTTCT
GAGCTCTAGATTTAAAGTATGAAATTACAAAGTCTTACATAAAAGGTTAATAAAATAAAT
TTATAGGCATGTAGTAAACAACAATAGCCATCATTAGCAAATATATAGTTCTTAAAACCA
AAAATATTATTTATTCAACTACTTATAATTACATATGCATGTATATGTCAAATATGATAA
CAATTGAGTGAATAAAAAGAAAATTATGTCATCAATATCAAT

>g8445.t2 Gene=g8445 Length=70
MQKNPSCNNEHMTKMLKENFDFESKHEKFNFIREGKIGSYKKEMDEEEIKKVEKYMDYPD
FENYGFEYKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g8445.t2 Gene3D G3DSA:3.40.50.300 - 1 68 2.30e-06
1 g8445.t2 Pfam PF00685 Sulfotransferase domain 1 57 1.50e-04
2 g8445.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 8 57 4.69e-05

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008146 sulfotransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed