General information for g8453.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8453 is located on chr_2: 30789279..30789950 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8453 | g8453.t4 | TTS | g8453.t4 | 30788597 | 30788597 |
| chr_2 | g8453 | g8453.t4 | isoform | g8453.t4 | 30788615 | 30789950 |
| chr_2 | g8453 | g8453.t4 | exon | g8453.t4.exon1 | 30788615 | 30788672 |
| chr_2 | g8453 | g8453.t4 | cds | g8453.t4.CDS1 | 30788615 | 30788672 |
| chr_2 | g8453 | g8453.t4 | exon | g8453.t4.exon2 | 30788736 | 30788819 |
| chr_2 | g8453 | g8453.t4 | cds | g8453.t4.CDS2 | 30788736 | 30788819 |
| chr_2 | g8453 | g8453.t4 | exon | g8453.t4.exon3 | 30789236 | 30789408 |
| chr_2 | g8453 | g8453.t4 | cds | g8453.t4.CDS3 | 30789236 | 30789408 |
| chr_2 | g8453 | g8453.t4 | exon | g8453.t4.exon4 | 30789466 | 30789950 |
| chr_2 | g8453 | g8453.t4 | cds | g8453.t4.CDS4 | 30789466 | 30789531 |
| chr_2 | g8453 | g8453.t4 | TSS | g8453.t4 | 30789966 | 30789966 |
Sequences
>g8453.t4 Gene=g8453 Length=800
ATGAAGAATTCAGTTGTGATTTTTTTACTCTTCAATTTTATTTTTATTTCAAATGGTAAA
AAATAAATTGTTTGAAAATTTTTTTTAAATTTTTGTTAAATTTTTTAGCTTTTTTCGATT
CAAAAATCGTTGGAGGATCAACAGTGCAACTTGGTCAAATTCCCTCACAAATTTCACTTA
GAACTCAAGCAAATGTTCATTTTTGTGGAGGTGCATTGATTTCAGGTCGTTGGGTGATCA
CAAGTGGTCAATGCACATCAGGTCGAGCTCATAATTCAATAAATGCTGTTGCTGGAACTG
TGACATTAAATGTAGGTGGTATAACACAAAGGAGTGTCAGAATTGTTCAACATCCACAGT
TTCATATTATAAGTTTGGCCAATGATGTGTCACTGATTGAAACTGAAAATTCTTTTACTA
TGACGCAACACATTCAAACGATTAATCTCGGAGTTGCTAATTTAGGTGAAAATATTGCAG
TTCAATTAAGCGGCTTTGGAGCAACACAAAGTTCTGGTCCGTTATCAAATAATCTACAAA
GAGTCAATGTTGTTACAATCACAAATGCCGCATGCATTTCACAACTTGGCAATCAAAACC
TTCAAGTGAATGACGCTAAATTGTGTACTTTTTTAAGTGGTCGTGGAATGTGCACTGGTG
ATCAAGGAGGACCAGTGATTGACATGAATAACCAACTTGTTGCTATCAAATCTTGGAATA
TCCAATGCTTTCAAAATTTTCCAGACGGACATGAGAGAATTTTTGTACACAGAAATTGGA
TTTTAAGTGTAATTTCCTAA
>g8453.t4 Gene=g8453 Length=126
MTQHIQTINLGVANLGENIAVQLSGFGATQSSGPLSNNLQRVNVVTITNAACISQLGNQN
LQVNDAKLCTFLSGRGMCTGDQGGPVIDMNNQLVAIKSWNIQCFQNFPDGHERIFVHRNW
ILSVIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8453.t4 | Gene3D | G3DSA:2.40.10.10 | - | 1 | 126 | 0.000 |
| 2 | g8453.t4 | PANTHER | PTHR24256:SF458 | IP10114P-RELATED | 2 | 123 | 0.000 |
| 3 | g8453.t4 | PANTHER | PTHR24256 | TRYPTASE-RELATED | 2 | 123 | 0.000 |
| 1 | g8453.t4 | Pfam | PF00089 | Trypsin | 2 | 121 | 0.000 |
| 6 | g8453.t4 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 126 | 11.582 |
| 4 | g8453.t4 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 2 | 125 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed