Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8453 g8453.t6 TTS g8453.t6 30788597 30788597
chr_2 g8453 g8453.t6 isoform g8453.t6 30788615 30789950
chr_2 g8453 g8453.t6 exon g8453.t6.exon1 30788615 30788819
chr_2 g8453 g8453.t6 cds g8453.t6.CDS1 30788732 30788819
chr_2 g8453 g8453.t6 exon g8453.t6.exon2 30789236 30789408
chr_2 g8453 g8453.t6 cds g8453.t6.CDS2 30789236 30789408
chr_2 g8453 g8453.t6 exon g8453.t6.exon3 30789466 30789842
chr_2 g8453 g8453.t6 cds g8453.t6.CDS3 30789466 30789842
chr_2 g8453 g8453.t6 exon g8453.t6.exon4 30789896 30789950
chr_2 g8453 g8453.t6 cds g8453.t6.CDS4 30789896 30789950
chr_2 g8453 g8453.t6 TSS g8453.t6 30789966 30789966

Sequences

>g8453.t6 Gene=g8453 Length=810
ATGAAGAATTCAGTTGTGATTTTTTTACTCTTCAATTTTATTTTTATTTCAAATGCTTTT
TTCGATTCAAAAATCGTTGGAGGATCAACAGTGCAACTTGGTCAAATTCCCTCACAAATT
TCACTTAGAACTCAAGCAAATGTTCATTTTTGTGGAGGTGCATTGATTTCAGGTCGTTGG
GTGATCACAAGTGGTCAATGCACATCAGGTCGAGCTCATAATTCAATAAATGCTGTTGCT
GGAACTGTGACATTAAATGTAGGTGGTATAACACAAAGGAGTGTCAGAATTGTTCAACAT
CCACAGTTTCATATTATAAGTTTGGCCAATGATGTGTCACTGATTGAAACTGAAAATTCT
TTTACTATGACGCAACACATTCAAACGATTAATCTCGGAGTTGCTAATTTAGGTGAAAAT
ATTGCAGTTCAATTAAGCGGCTTTGGAGCAACACAAAGTTCTGGTCCGTTATCAAATAAT
CTACAAAGAGTCAATGTTGTTACAATCACAAATGCCGCATGCATTTCACAACTTGGCAAT
CAAAACCTTCAAGTGAATGACGCTAAATTGTGTACTTTTTTAAGTGGTCGTGGAATGTGC
ACTGGTGATCAAGGAGGACCAGTGATTGACATGAATAACCAACTTGTTGCTATCAAATCT
TGGAATATCCAATGCTTTCAAAATTTTCCGTAAGATTTTTTTAATTCATTTAAAAATTTT
TTTGTAAATAAAATTTTTATTGAATTTTTTAGAGACGGACATGAGAGAATTTTTGTACAC
AGAAATTGGATTTTAAGTGTAATTTCCTAA

>g8453.t6 Gene=g8453 Length=230
MKNSVVIFLLFNFIFISNAFFDSKIVGGSTVQLGQIPSQISLRTQANVHFCGGALISGRW
VITSGQCTSGRAHNSINAVAGTVTLNVGGITQRSVRIVQHPQFHIISLANDVSLIETENS
FTMTQHIQTINLGVANLGENIAVQLSGFGATQSSGPLSNNLQRVNVVTITNAACISQLGN
QNLQVNDAKLCTFLSGRGMCTGDQGGPVIDMNNQLVAIKSWNIQCFQNFP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g8453.t6 CDD cd00190 Tryp_SPc 25 225 2.38581E-48
9 g8453.t6 Gene3D G3DSA:2.40.10.10 - 25 227 4.6E-42
10 g8453.t6 Gene3D G3DSA:2.40.10.10 - 37 129 4.6E-42
2 g8453.t6 PANTHER PTHR24276 POLYSERASE-RELATED 6 227 2.6E-38
3 g8453.t6 PANTHER PTHR24276:SF78 AT20289P-RELATED 6 227 2.6E-38
6 g8453.t6 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 52 67 1.5E-9
5 g8453.t6 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 107 121 1.5E-9
4 g8453.t6 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 197 209 1.5E-9
1 g8453.t6 Pfam PF00089 Trypsin 25 226 1.2E-35
12 g8453.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
13 g8453.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
14 g8453.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 16 -
15 g8453.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 21 -
11 g8453.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 230 -
18 g8453.t6 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 25 230 20.622
17 g8453.t6 SMART SM00020 trypsin_2 24 228 2.4E-30
7 g8453.t6 SUPERFAMILY SSF50494 Trypsin-like serine proteases 18 227 2.02E-47
8 g8453.t6 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed