Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8453 g8453.t7 TTS g8453.t7 30788597 30788597
chr_2 g8453 g8453.t7 isoform g8453.t7 30789279 30789950
chr_2 g8453 g8453.t7 exon g8453.t7.exon1 30789279 30789408
chr_2 g8453 g8453.t7 cds g8453.t7.CDS1 30789280 30789408
chr_2 g8453 g8453.t7 exon g8453.t7.exon2 30789466 30789842
chr_2 g8453 g8453.t7 cds g8453.t7.CDS2 30789466 30789842
chr_2 g8453 g8453.t7 exon g8453.t7.exon3 30789896 30789950
chr_2 g8453 g8453.t7 cds g8453.t7.CDS3 30789896 30789950
chr_2 g8453 g8453.t7 TSS g8453.t7 30789966 30789966

Sequences

>g8453.t7 Gene=g8453 Length=562
ATGAAGAATTCAGTTGTGATTTTTTTACTCTTCAATTTTATTTTTATTTCAAATGCTTTT
TTCGATTCAAAAATCGTTGGAGGATCAACAGTGCAACTTGGTCAAATTCCCTCACAAATT
TCACTTAGAACTCAAGCAAATGTTCATTTTTGTGGAGGTGCATTGATTTCAGGTCGTTGG
GTGATCACAAGTGGTCAATGCACATCAGGTCGAGCTCATAATTCAATAAATGCTGTTGCT
GGAACTGTGACATTAAATGTAGGTGGTATAACACAAAGGAGTGTCAGAATTGTTCAACAT
CCACAGTTTCATATTATAAGTTTGGCCAATGATGTGTCACTGATTGAAACTGAAAATTCT
TTTACTATGACGCAACACATTCAAACGATTAATCTCGGAGTTGCTAATTTAGGTGAAAAT
ATTGCAGTTCAATTAAGCGGCTTTGGAGCAACACAAAGTTCTGGTCCGTTATCAAATAAT
CTACAAAGAGTCAATGTTGTTACAATCACAAATGCCGCATGCATTTCACAACTTGGCAAT
CAAAACCTTCAAGTGAATGACG

>g8453.t7 Gene=g8453 Length=187
MKNSVVIFLLFNFIFISNAFFDSKIVGGSTVQLGQIPSQISLRTQANVHFCGGALISGRW
VITSGQCTSGRAHNSINAVAGTVTLNVGGITQRSVRIVQHPQFHIISLANDVSLIETENS
FTMTQHIQTINLGVANLGENIAVQLSGFGATQSSGPLSNNLQRVNVVTITNAACISQLGN
QNLQVND

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g8453.t7 CDD cd00190 Tryp_SPc 25 182 6.19589E-40
6 g8453.t7 Gene3D G3DSA:2.40.10.10 - 25 181 4.7E-31
7 g8453.t7 Gene3D G3DSA:2.40.10.10 - 37 126 4.7E-31
2 g8453.t7 PANTHER PTHR24276 POLYSERASE-RELATED 6 179 7.7E-29
3 g8453.t7 PANTHER PTHR24276:SF78 AT20289P-RELATED 6 179 7.7E-29
1 g8453.t7 Pfam PF00089 Trypsin 25 180 2.6E-25
9 g8453.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
10 g8453.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
11 g8453.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 16 -
12 g8453.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 21 -
8 g8453.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 187 -
15 g8453.t7 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 25 187 15.028
14 g8453.t7 SMART SM00020 trypsin_2 24 186 3.1E-8
4 g8453.t7 SUPERFAMILY SSF50494 Trypsin-like serine proteases 18 181 2.89E-38
5 g8453.t7 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed