General information for g8477.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lysozyme c-1.
Parent gene
- The parent gene g8477 is located on chr_2: 30886527..30887780 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8477 | g8477.t3 | isoform | g8477.t3 | 30885833 | 30887207 |
| chr_2 | g8477 | g8477.t3 | exon | g8477.t3.exon1 | 30885833 | 30886139 |
| chr_2 | g8477 | g8477.t3 | exon | g8477.t3.exon2 | 30886508 | 30886656 |
| chr_2 | g8477 | g8477.t3 | cds | g8477.t3.CDS1 | 30886527 | 30886656 |
| chr_2 | g8477 | g8477.t3 | exon | g8477.t3.exon3 | 30886745 | 30886891 |
| chr_2 | g8477 | g8477.t3 | cds | g8477.t3.CDS2 | 30886745 | 30886891 |
| chr_2 | g8477 | g8477.t3 | exon | g8477.t3.exon4 | 30886992 | 30887075 |
| chr_2 | g8477 | g8477.t3 | cds | g8477.t3.CDS3 | 30886992 | 30887075 |
| chr_2 | g8477 | g8477.t3 | exon | g8477.t3.exon5 | 30887140 | 30887207 |
| chr_2 | g8477 | g8477.t3 | cds | g8477.t3.CDS4 | 30887140 | 30887207 |
| chr_2 | g8477 | g8477.t3 | TTS | g8477.t3 | 30887790 | 30887790 |
| chr_2 | g8477 | g8477.t3 | TSS | g8477.t3 | NA | NA |
Sequences
>g8477.t3 Gene=g8477 Length=755
AAAAATACAATTTAAGTAGAGTGATAGTCATAGCATGCGAGTTCTCAGTTTGTGTTCATC
GTCTTTAGAGTCAAATAGCTAAGAGTAATCGCGTTATAAATTTGTTTTCATTAAAAGATT
TACTTGCGAAAATTTCATCAATAAATAATCAAAAATATTATTTGGGTGTTAAAATCTTTA
ATCCACTAAACAATTCAATTAAGCCTGATCTTTTATAGAAAGGAAAAAAGGTGTTAATTG
ATCTTTTATGAATCAATTGAAAGTGATTCCTTTCATGAATAACTGGAGTGAAAATCTTAC
TCATTCGTCTACTTAGAAAATCAACGATGATGATGAGGTACCTGGAGTTGTTATTATTAT
TGCTAGTTGTTACAACAGATGCCAAAATATTCACAAGATGTGAATTAGCAAAGGAACTTT
TCAATAGTGGCATTCCAAAGACATTCATCTCAAATTGGGTTTGCTTGATCGAGGCAGAAT
CAGGTGCTGACACATCAAAAGTTACAGAATTTCCGAATCTAAGTGCCAGTTATGGGATAT
TTCAGATAAACTCAAAAGAATGGTGCCGTAAATCGCGAAAAGGAGGCGAGTGTGGGACGC
GTTTAGACTTTTTAACTGAAGATATTAAAAATGATATAAGATGCGCTAAAGTCATATACA
ATCGTCATGGATTTTCATATTGGAAAGGTTGGACATCACGATGCAAATCTCGTCCATTAC
CTGATGTGTCAAAATGTTCGTATTCCTATTTTTGA
>g8477.t3 Gene=g8477 Length=142
MMMRYLELLLLLLVVTTDAKIFTRCELAKELFNSGIPKTFISNWVCLIEAESGADTSKVT
EFPNLSASYGIFQINSKEWCRKSRKGGECGTRLDFLTEDIKNDIRCAKVIYNRHGFSYWK
GWTSRCKSRPLPDVSKCSYSYF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g8477.t3 | CDD | cd16899 | LYZ_C_invert | 20 | 137 | 1.01146E-54 |
| 11 | g8477.t3 | Gene3D | G3DSA:1.10.530.10 | - | 16 | 138 | 7.3E-40 |
| 2 | g8477.t3 | PANTHER | PTHR11407 | LYSOZYME C | 6 | 140 | 2.1E-45 |
| 3 | g8477.t3 | PANTHER | PTHR11407:SF63 | LYSOZYME | 6 | 140 | 2.1E-45 |
| 6 | g8477.t3 | PRINTS | PR00135 | Lysozyme/alpha-lactalbumin superfamily signature | 22 | 32 | 7.4E-16 |
| 4 | g8477.t3 | PRINTS | PR00135 | Lysozyme/alpha-lactalbumin superfamily signature | 39 | 48 | 7.4E-16 |
| 5 | g8477.t3 | PRINTS | PR00135 | Lysozyme/alpha-lactalbumin superfamily signature | 66 | 82 | 7.4E-16 |
| 7 | g8477.t3 | PRINTS | PR00135 | Lysozyme/alpha-lactalbumin superfamily signature | 96 | 111 | 7.4E-16 |
| 8 | g8477.t3 | PRINTS | PR00135 | Lysozyme/alpha-lactalbumin superfamily signature | 115 | 126 | 7.4E-16 |
| 1 | g8477.t3 | Pfam | PF00062 | C-type lysozyme/alpha-lactalbumin family | 20 | 137 | 4.1E-26 |
| 13 | g8477.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 14 | g8477.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 15 | g8477.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 15 | - |
| 16 | g8477.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 12 | g8477.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 142 | - |
| 19 | g8477.t3 | ProSiteProfiles | PS51348 | Glycosyl hydrolases family 22 (GH22) domain profile. | 20 | 140 | 26.382 |
| 18 | g8477.t3 | SMART | SM00263 | lysozyme-fin | 20 | 138 | 1.5E-34 |
| 9 | g8477.t3 | SUPERFAMILY | SSF53955 | Lysozyme-like | 19 | 137 | 2.17E-36 |
| 10 | g8477.t3 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed