General information for g8482.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fumarylacetoacetase.
Parent gene
- The parent gene g8482 is located on chr_2: 30917143..30922428 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8482 | g8482.t13 | TTS | g8482.t13 | 30915586 | 30915586 |
| chr_2 | g8482 | g8482.t13 | isoform | g8482.t13 | 30915626 | 30917321 |
| chr_2 | g8482 | g8482.t13 | exon | g8482.t13.exon1 | 30915626 | 30915858 |
| chr_2 | g8482 | g8482.t13 | cds | g8482.t13.CDS1 | 30915626 | 30915858 |
| chr_2 | g8482 | g8482.t13 | exon | g8482.t13.exon2 | 30916136 | 30916246 |
| chr_2 | g8482 | g8482.t13 | cds | g8482.t13.CDS2 | 30916136 | 30916246 |
| chr_2 | g8482 | g8482.t13 | exon | g8482.t13.exon3 | 30916298 | 30916899 |
| chr_2 | g8482 | g8482.t13 | cds | g8482.t13.CDS3 | 30916298 | 30916796 |
| chr_2 | g8482 | g8482.t13 | exon | g8482.t13.exon4 | 30916984 | 30917176 |
| chr_2 | g8482 | g8482.t13 | exon | g8482.t13.exon5 | 30917238 | 30917321 |
| chr_2 | g8482 | g8482.t13 | TSS | g8482.t13 | 30917422 | 30917422 |
Sequences
>g8482.t13 Gene=g8482 Length=1223
ATGTCAACGTTTGTAGATATTCCAGTTGGAAGCGATTTTCCATTACAAAATTTACCTTAT
GGCGTATTTTCCACAGCAAATAAAGTCAACCGGCGCATTGGAGTTGCGATTGGCGAGAAG
ATTTTAGATTTAAGCGTTGTTGCCACATTTTATCCTGAGTACGTTCAAAATGCTTTACGC
GCTGATGTTTTAAATGAACTTATGGAACTCGGATATGATGCATGGAATGATGTTCGTCGA
ATTACGAAAAGTCTTCTCACCACTGGCTCTGATTTACTGCTCTCATTAATCAATCAGATG
CACAAATGCATTTGCCAGCAAAAATTGGCGATTATACTGATTTTTATTCTTCAATTCATC
ATGCAACGAATGTTGGTGTGATGTTTAGAGGAAAGGAGAATGCACTTATGCCAAATTGGA
AATGGCTACCAGTTGGTTATCATGGACGTGCAAGTTCTGTTGTTGTTTCTGGTACACCAA
TTAATCGACCTCTTGGTCAGACTCAACCTGTTGATGGCGCTGATCCTGTTTTTGGGCCTT
GTCGTCTATTTGATTTTGAACTTGAAATGGCATTTTTCATTGGTGGACCAGCAAATAAAC
TTGGCGAACGTGTTACAACAAAAGAAGCAGCAAAACGTGTTTTTGGTTTTGTTCTTATGA
ATGATTGGAGTGCACGTGATGTACAGAAATGGGAATATGTTCCATTAGGTCCATTTACTG
CTAAAAATGTTGGAACTTCAATTTCACCTTGGGTTGTTACTGTTGCTGCATTGGAACCTT
TTGCTGTTCCAAATTTCCCTCAAGATCCTAAACCATTCCCTTATTTGCAACATGATGAAG
TTTTCAATTTTGATATCAATTTGATTGTTGACATTAAACCTGAAAAAGGAACACAAACAA
CTGTGAGTCAATCAAATTATAAATACTTGTATTGGACAGCATTGCAACAAATTGCTCATC
ATTCTGTCACTGGATGTAATTTAAATCCTGGTGATTTATTAGCTTCAGGAACTATTAGTG
GTGAAACATCAGACTCATATGGTTCAATGTTAGAATTAAGCTGGAAAGGAACTCGAACAA
TTTCACTTGGTGGAAATGAGACAAGAAAATTTCTTCAAGATGGTGATGAAGTCATAATTC
GTGGCTTCTGCAATGGCGAATACCGCATTGGTTTTGGTGAATGTCGTGGAAAAGTTTTGC
CAACAATTCCATTTGAAAATTAA
>g8482.t13 Gene=g8482 Length=280
MFRGKENALMPNWKWLPVGYHGRASSVVVSGTPINRPLGQTQPVDGADPVFGPCRLFDFE
LEMAFFIGGPANKLGERVTTKEAAKRVFGFVLMNDWSARDVQKWEYVPLGPFTAKNVGTS
ISPWVVTVAALEPFAVPNFPQDPKPFPYLQHDEVFNFDINLIVDIKPEKGTQTTVSQSNY
KYLYWTALQQIAHHSVTGCNLNPGDLLASGTISGETSDSYGSMLELSWKGTRTISLGGNE
TRKFLQDGDEVIIRGFCNGEYRIGFGECRGKVLPTIPFEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8482.t13 | Gene3D | G3DSA:3.90.850.10 | Fumarylacetoacetate hydrolase | 1 | 276 | 0 |
| 2 | g8482.t13 | PANTHER | PTHR43069:SF2 | FUMARYLACETOACETASE | 1 | 275 | 0 |
| 3 | g8482.t13 | PANTHER | PTHR43069 | FUMARYLACETOACETASE | 1 | 275 | 0 |
| 1 | g8482.t13 | Pfam | PF01557 | Fumarylacetoacetate (FAA) hydrolase family | 11 | 272 | 0 |
| 4 | g8482.t13 | SUPERFAMILY | SSF56529 | FAH | 1 | 274 | 0 |
| 6 | g8482.t13 | TIGRFAM | TIGR01266 | fum_ac_acetase: fumarylacetoacetase | 1 | 275 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009072 | aromatic amino acid family metabolic process | BP |
| GO:0004334 | fumarylacetoacetase activity | MF |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed