Gene loci information

Transcript annotation

  • This transcript has been annotated as Fumarylacetoacetase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8482 g8482.t5 TTS g8482.t5 30915586 30915586
chr_2 g8482 g8482.t5 isoform g8482.t5 30915626 30917321
chr_2 g8482 g8482.t5 exon g8482.t5.exon1 30915626 30915858
chr_2 g8482 g8482.t5 cds g8482.t5.CDS1 30915626 30915858
chr_2 g8482 g8482.t5 exon g8482.t5.exon2 30916136 30916246
chr_2 g8482 g8482.t5 cds g8482.t5.CDS2 30916136 30916246
chr_2 g8482 g8482.t5 exon g8482.t5.exon3 30916298 30916899
chr_2 g8482 g8482.t5 cds g8482.t5.CDS3 30916298 30916899
chr_2 g8482 g8482.t5 exon g8482.t5.exon4 30916959 30917321
chr_2 g8482 g8482.t5 cds g8482.t5.CDS4 30916959 30917194
chr_2 g8482 g8482.t5 TSS g8482.t5 30917422 30917422

Sequences

>g8482.t5 Gene=g8482 Length=1309
ATGTCAACGTTTGTAGATATTCCAGTTGGAAGCGATTTTCCATTACAAAATTTACCTTAT
GGCGTATTTTCCACAGCAAATAAAGTTAGTTACATCTTAATAATTTATTCTATTATTTAT
GATCAACATGTTTTTTCATCTCAAGGTCAACCGGCGCATTGGAGTTGCGATTGGCGAGAA
GATTTTAGATTTAAGCGTTGTTGCCACATTTTATCCTGAGTACGTTCAAAATGCTTTACG
CGCTGATGTTTTAAATGAACTTATGGAACTCGGATATGATGCATGGAATGATGTTCGTCG
AATTACGAAAAGTCTTCTCACCACTGGCTCTGATTTACATCAAAATACTGAATTGCAAAA
AATTGCTCTCATTAATCAATCAGATGCACAAATGCATTTGCCAGCAAAAATTGGCGATTA
TACTGATTTTTATTCTTCAATTCATCATGCAACGAATGTTGGTGTGATGTTTAGAGGAAA
GGAGAATGCACTTATGCCAAATTGGAAATGGCTACCAGTTGGTTATCATGGACGTGCAAG
TTCTGTTGTTGTTTCTGGTACACCAATTAATCGACCTCTTGGTCAGACTCAACCTGTTGA
TGGCGCTGATCCTGTTTTTGGGCCTTGTCGTCTATTTGATTTTGAACTTGAAATGGCATT
TTTCATTGGTGGACCAGCAAATAAACTTGGCGAACGTGTTACAACAAAAGAAGCAGCAAA
ACGTGTTTTTGGTTTTGTTCTTATGAATGATTGGAGTGCACGTGATGTACAGAAATGGGA
ATATGTTCCATTAGGTCCATTTACTGCTAAAAATGTTGGAACTTCAATTTCACCTTGGGT
TGTTACTGTTGCTGCATTGGAACCTTTTGCTGTTCCAAATTTCCCTCAAGATCCTAAACC
ATTCCCTTATTTGCAACATGATGAAGTTTTCAATTTTGATATCAATTTGATTGTTGACAT
TAAACCTGAAAAAGGAACACAAACAACTGTGAGTCAATCAAATTATAAATACTTGTATTG
GACAGCATTGCAACAAATTGCTCATCATTCTGTCACTGGATGTAATTTAAATCCTGGTGA
TTTATTAGCTTCAGGAACTATTAGTGGTGAAACATCAGACTCATATGGTTCAATGTTAGA
ATTAAGCTGGAAAGGAACTCGAACAATTTCACTTGGTGGAAATGAGACAAGAAAATTTCT
TCAAGATGGTGATGAAGTCATAATTCGTGGCTTCTGCAATGGCGAATACCGCATTGGTTT
TGGTGAATGTCGTGGAAAAGTTTTGCCAACAATTCCATTTGAAAATTAA

>g8482.t5 Gene=g8482 Length=393
MFFHLKVNRRIGVAIGEKILDLSVVATFYPEYVQNALRADVLNELMELGYDAWNDVRRIT
KSLLTTGSDLHQNTELQKIALINQSDAQMHLPAKIGDYTDFYSSIHHATNVGVMFRGKEN
ALMPNWKWLPVGYHGRASSVVVSGTPINRPLGQTQPVDGADPVFGPCRLFDFELEMAFFI
GGPANKLGERVTTKEAAKRVFGFVLMNDWSARDVQKWEYVPLGPFTAKNVGTSISPWVVT
VAALEPFAVPNFPQDPKPFPYLQHDEVFNFDINLIVDIKPEKGTQTTVSQSNYKYLYWTA
LQQIAHHSVTGCNLNPGDLLASGTISGETSDSYGSMLELSWKGTRTISLGGNETRKFLQD
GDEVIIRGFCNGEYRIGFGECRGKVLPTIPFEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g8482.t5 Gene3D G3DSA:2.30.30.230 Fumarylacetoacetate hydrolase 2 89 0
8 g8482.t5 Gene3D G3DSA:3.90.850.10 Fumarylacetoacetate hydrolase 90 389 0
3 g8482.t5 PANTHER PTHR43069:SF2 FUMARYLACETOACETASE 8 388 0
4 g8482.t5 PANTHER PTHR43069 FUMARYLACETOACETASE 8 388 0
1 g8482.t5 Pfam PF09298 Fumarylacetoacetase N-terminal 8 92 0
2 g8482.t5 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 98 385 0
6 g8482.t5 SUPERFAMILY SSF63433 Fumarylacetoacetate hydrolase, FAH, N-terminal domain 9 92 0
5 g8482.t5 SUPERFAMILY SSF56529 FAH 94 387 0
9 g8482.t5 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 7 388 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009072 aromatic amino acid family metabolic process BP
GO:0004334 fumarylacetoacetase activity MF
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values