Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative N-acetylgalactosamine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8486 g8486.t2 TSS g8486.t2 30938682 30938682
chr_2 g8486 g8486.t2 isoform g8486.t2 30938795 30939389
chr_2 g8486 g8486.t2 exon g8486.t2.exon1 30938795 30938867
chr_2 g8486 g8486.t2 cds g8486.t2.CDS1 30938795 30938867
chr_2 g8486 g8486.t2 exon g8486.t2.exon2 30938948 30939060
chr_2 g8486 g8486.t2 cds g8486.t2.CDS2 30938948 30939060
chr_2 g8486 g8486.t2 exon g8486.t2.exon3 30939128 30939389
chr_2 g8486 g8486.t2 cds g8486.t2.CDS3 30939128 30939388
chr_2 g8486 g8486.t2 TTS g8486.t2 NA NA

Sequences

>g8486.t2 Gene=g8486 Length=448
ATGGATGATGACTCATTTGTACCAGTTCATAGAAAGTGCGATGCTGCTGATGAAAGGATT
GTTGAATTGCGCGACTTCTTCATAAAAGAATTTCATAAAAATCCGGAGTTTTTCGTAAAA
GTACCAGGTCGTGTAAACATTATCGGTGAACATGTAGACTATTCGAATTATGGAGTCTGT
CCTATGGCAATTTCTCAAAACATTCTTCTCGCTGTAGCTTCGAGTGATGACGACATTATA
TATATGAAAAACATTCAGTCAAAATATGGGAAATTCAAATGTATCATAAATAATATCAAA
ATTGAACCTCCAGCAGCTGGTTCTTACCCATTATGGCATAATTACTTCCTTTGTGGCGTT
AAAGGCATTTTGGATTATTTACCGAAAATTGGTGATCATGCTCATAAAGGCTTTTTTGTC
GCTGTGAGTGGAAACATTCCAGCAGCAG

>g8486.t2 Gene=g8486 Length=149
MDDDSFVPVHRKCDAADERIVELRDFFIKEFHKNPEFFVKVPGRVNIIGEHVDYSNYGVC
PMAISQNILLAVASSDDDIIYMKNIQSKYGKFKCIINNIKIEPPAAGSYPLWHNYFLCGV
KGILDYLPKIGDHAHKGFFVAVSGNIPAA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g8486.t2 Gene3D G3DSA:3.30.230.10 - 10 149 6.5E-34
2 g8486.t2 PANTHER PTHR10457 MEVALONATE KINASE/GALACTOKINASE 14 148 4.0E-33
3 g8486.t2 PANTHER PTHR10457:SF7 N-ACETYLGALACTOSAMINE KINASE 14 148 4.0E-33
5 g8486.t2 PRINTS PR00959 Mevalonate kinase family signature 41 65 8.4E-10
6 g8486.t2 PRINTS PR00473 Galactokinase signature 43 61 1.2E-10
7 g8486.t2 PRINTS PR00473 Galactokinase signature 112 123 1.2E-10
8 g8486.t2 PRINTS PR00473 Galactokinase signature 137 149 1.2E-10
4 g8486.t2 PRINTS PR00959 Mevalonate kinase family signature 144 149 8.4E-10
1 g8486.t2 Pfam PF10509 Galactokinase galactose-binding signature 27 73 6.0E-19
10 g8486.t2 ProSitePatterns PS00106 Galactokinase signature. 43 54 -
9 g8486.t2 SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like 15 148 1.67E-24

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046835 carbohydrate phosphorylation BP
GO:0005524 ATP binding MF
GO:0006012 galactose metabolic process BP
GO:0004335 galactokinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed