Gene loci information

Transcript annotation

  • This transcript has been annotated as N-acetylgalactosamine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8486 g8486.t6 TSS g8486.t6 30938682 30938682
chr_2 g8486 g8486.t6 isoform g8486.t6 30938795 30940972
chr_2 g8486 g8486.t6 exon g8486.t6.exon1 30938795 30938867
chr_2 g8486 g8486.t6 exon g8486.t6.exon2 30938948 30939392
chr_2 g8486 g8486.t6 cds g8486.t6.CDS1 30939185 30939392
chr_2 g8486 g8486.t6 exon g8486.t6.exon3 30939456 30940043
chr_2 g8486 g8486.t6 cds g8486.t6.CDS2 30939456 30940043
chr_2 g8486 g8486.t6 exon g8486.t6.exon4 30940122 30940972
chr_2 g8486 g8486.t6 cds g8486.t6.CDS3 30940122 30940507
chr_2 g8486 g8486.t6 TTS g8486.t6 30940963 30940963

Sequences

>g8486.t6 Gene=g8486 Length=1957
ATGGATGATGACTCATTTGTACCAGTTCATAGAAAGTGCGATGCTGCTGATGAAAGGATT
GTTGAATTGCGCGACTTCTTCATAAAAGAATTTCATAAAAATCCGGAGTTTTTCGTAAAA
GTACCAGGTCGTGTAAACATTATCGGTGAACATGTAGACTATTCGAATTATGGAGTCTGT
CCTATGGTTTGAAACATGATCATTATTGTGCAAGGAATGTAAATATTTAGAACAACATTT
TTTGTATTCGTAGGCAATTTCTCAAAACATTCTTCTCGCTGTAGCTTCGAGTGATGACGA
CATTATATATATGAAAAACATTCAGTCAAAATATGGGAAATTCAAATGTATCATAAATAA
TATCAAAATTGAACCTCCAGCAGCTGGTTCTTACCCATTATGGCATAATTACTTCCTTTG
TGGCGTTAAAGGCATTTTGGATTATTTACCGAAAATTGGTGATCATGCTCATAAAGGCTT
TTTTGTCGCTGTGAGTGGAAACATTCCAGCAGCAGCAGGTTTAAGTTCGTCATCGGCACT
TGTCTGTTCAGCCGCACTTGCTACCGCTTATCTTTATAAGATGCCATTAAATAAGGAATT
GCTTGCAACACTTTCAGCTTCGAGTGAGCGTTTTATTGGAACGCAAGGTGGAGGAATGGA
TCAAGCTATTGCATTTTTAGCTAAAAAAGGCTATGCGCAATTTATCGAATTTGCTCCTAT
TCGTGCAACTCCAATTCGATTACCATCTGATGCTGTTTTTGTTATAGCAAATTCACTTGC
AGAAGCAAATAAGGCTGCAACTTCTGATTTTAATCAACGTGTTGTTGAATGCAGGATCGC
CACAAAATTGTTGGCAAAGTTGACTGATCGACCTTGGCAAGAAGTTGAGAAATTGGGTCA
ACTTCAATCGGAAGTGCTCGATGTTGAACTCGACGAATTTGAGCAGTTGATAAAAAAACA
TTTAACCAAAGATATTTATACAAAGCAAGAATTAATTGATATTTTCCGTATATCTGAGAT
AGAATTTGATGAGAAAATGTTGACACCGAATACAAAAAATGCAAAGGAATTCAAATTACG
ACAAAGAGCGCTTCATGTTGTTCAAGAATCACTTCGTGTCGAGCGTTTTAGAGAAATTGC
GGACGCAATTGATGAAGATAATGAAGATGATGCTGTCGAACAGATTTCAGAATTGTTATC
AAAATCGCACAATAGCTTGAAGACACTTTATGAATGTAGTCATCCAAATCTAGATCAACT
GATTAACATCTCAAAAGAATTTGGTGTAAGTGCTCGTTTAACGGGTGCCGGATGGGGAGG
TTGCATTGTTGCATTATGCGATTCTATTACAACTTGTGATCGCTATATTTCAACATTGAA
GGAATTTTATTACGATAAAATTAAACATTCCAAAAATTCAGATCTCGATGAAATTGTTTT
TGCAACAGAACCACAAAACGGCGCTGAAATTTTTATTGCAGATTTTTCTTAAAATTTAAA
TCGCTAGTAAAATTTTTTTATCTAATTTTAAGATCTCGAAAAATCATTTTATCCAGATTT
TTTATCAATTAGCATTAATTAAATAGTTCATTCCGTATTTTGCAGAAAGTAATTAATGTA
GTGCTGAGTGCAATACTAATTAGTATTTTTTACTATCTACTTATTCAACTACATATTCTA
AAAATATTATTATAAGACTTTTTCAAACTTTTATCGGCTTTTATGATATTTGACTTTAGC
CTTAGATGTAGCATGAAATAATGGATCAACTTTTTTATAGCAATTTTTACTCTTGCGATA
TTTTAAAAGTTTTCCATGTGATTTTTTTCTTCGTAATTGGATCGCTTTTTGCCATATAAA
ATTATACATTTATTCCATTAAATGCAACCTATAACATGTACTTTTATCATGTACTTTTAT
CATGTTTTTATCAAATAAACTATTAAAAATTATGAAA

>g8486.t6 Gene=g8486 Length=393
MKNIQSKYGKFKCIINNIKIEPPAAGSYPLWHNYFLCGVKGILDYLPKIGDHAHKGFFVA
VSGNIPAAAGLSSSSALVCSAALATAYLYKMPLNKELLATLSASSERFIGTQGGGMDQAI
AFLAKKGYAQFIEFAPIRATPIRLPSDAVFVIANSLAEANKAATSDFNQRVVECRIATKL
LAKLTDRPWQEVEKLGQLQSEVLDVELDEFEQLIKKHLTKDIYTKQELIDIFRISEIEFD
EKMLTPNTKNAKEFKLRQRALHVVQESLRVERFREIADAIDEDNEDDAVEQISELLSKSH
NSLKTLYECSHPNLDQLINISKEFGVSARLTGAGWGGCIVALCDSITTCDRYISTLKEFY
YDKIKHSKNSDLDEIVFATEPQNGAEIFIADFS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g8486.t6 Gene3D G3DSA:3.30.230.10 - 2 142 1.1E-118
15 g8486.t6 Gene3D G3DSA:3.30.70.3170 - 143 363 1.1E-118
16 g8486.t6 Gene3D G3DSA:1.20.1440.340 - 166 308 1.1E-118
3 g8486.t6 PANTHER PTHR10457 MEVALONATE KINASE/GALACTOKINASE 3 387 9.0E-114
4 g8486.t6 PANTHER PTHR10457:SF7 N-ACETYLGALACTOSAMINE KINASE 3 387 9.0E-114
17 g8486.t6 PIRSF PIRSF000530 Galactokinase 3 390 6.4E-88
10 g8486.t6 PRINTS PR00473 Galactokinase signature 31 42 5.7E-10
9 g8486.t6 PRINTS PR00473 Galactokinase signature 56 74 5.7E-10
7 g8486.t6 PRINTS PR00959 Mevalonate kinase family signature 63 85 9.5E-21
6 g8486.t6 PRINTS PR00959 Mevalonate kinase family signature 105 124 9.5E-21
8 g8486.t6 PRINTS PR00473 Galactokinase signature 258 272 5.7E-10
5 g8486.t6 PRINTS PR00959 Mevalonate kinase family signature 327 344 9.5E-21
2 g8486.t6 Pfam PF00288 GHMP kinases N terminal domain 60 123 4.4E-13
1 g8486.t6 Pfam PF08544 GHMP kinases C terminal 290 345 4.1E-10
13 g8486.t6 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 65 76 -
11 g8486.t6 SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like 22 146 1.21E-26
12 g8486.t6 SUPERFAMILY SSF55060 GHMP Kinase, C-terminal domain 147 364 1.32E-35

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046835 carbohydrate phosphorylation BP
GO:0005524 ATP binding MF
GO:0016301 kinase activity MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006012 galactose metabolic process BP
GO:0005737 cytoplasm CC
GO:0004335 galactokinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values