Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8506 g8506.t1 isoform g8506.t1 31064740 31065873
chr_2 g8506 g8506.t1 exon g8506.t1.exon1 31064740 31064995
chr_2 g8506 g8506.t1 cds g8506.t1.CDS1 31064740 31064995
chr_2 g8506 g8506.t1 exon g8506.t1.exon2 31065150 31065342
chr_2 g8506 g8506.t1 cds g8506.t1.CDS2 31065150 31065342
chr_2 g8506 g8506.t1 exon g8506.t1.exon3 31065396 31065873
chr_2 g8506 g8506.t1 cds g8506.t1.CDS3 31065396 31065873
chr_2 g8506 g8506.t1 TSS g8506.t1 NA NA
chr_2 g8506 g8506.t1 TTS g8506.t1 NA NA

Sequences

>g8506.t1 Gene=g8506 Length=927
ATGTTTAATAATAATAAATTAATGGAGCCATTAACCATTCATCCTTTTATACTTCGCAGT
TTTGGAGATATGGTCGCTCTTCAAAAGGACGAGTCTTTACAAAAACGTCCTGAATATGTT
CTATTTGCTCTCATATTTATATTATTCGGTTTAGCAATAGTTGCTGCCTCACTTAATTTA
CTCGTTCTTCGTTTTGTCACAATGAATACTGAAGATGAAAGAAGAGATGAGGCACAAGCA
ATGCAAGCGCTTCAAGGTGCTGTAAGATTGGATGGCGATGTGATAACAGCAAATGGTTCA
ATTTTAAGCGGTCATTTAGGTCATCGAATACACATAGATCACAGTGTGCAATATTATCCC
CAATTGCAAGATTCTGCTTCTTTAGATGGCGACAATACTTCAATGTGTTCTTGCTCATGT
GGCTGTTTTAGAGCTTCTAGACAACGACATCAAAGGTATCATGTAAGAAAACCTCCACAG
CCATTTTATATTCAACCTATGCCAAAGCCACGATTCGATTTTCGTGACATTAATAAAGAG
CGATTAAAGAAAATTTCGCTCTCATCGTCATCTCTGCCACCTGTTAGTCTCTTTCCCGAA
GAGAAATCAAAGATTCAGGCTATAACCGATGGGATGTACAATTTTTATAGTTCACAAGAC
AATATTAATGATGACATTTATAATTTTTATGATAACGATAAACTTCCTGAACTGCGTCAT
CAATCATTGGCTGATTTTGATGATTTGTATCCAATTGAAAATAAATTTCTCTTCGATCCA
CTCGACGACGACGAAGATGAAGATATGAGCGGCGGTCCGCCACAAATGACTACAACAACA
ACAATCGCAAGTTTCAAGTGTCAAACGCAAACACAACAAACAACAGTCACAATCTATCAG
ACGCATAATAGAGCTTCTTCACTTTAA

>g8506.t1 Gene=g8506 Length=308
MFNNNKLMEPLTIHPFILRSFGDMVALQKDESLQKRPEYVLFALIFILFGLAIVAASLNL
LVLRFVTMNTEDERRDEAQAMQALQGAVRLDGDVITANGSILSGHLGHRIHIDHSVQYYP
QLQDSASLDGDNTSMCSCSCGCFRASRQRHQRYHVRKPPQPFYIQPMPKPRFDFRDINKE
RLKKISLSSSSLPPVSLFPEEKSKIQAITDGMYNFYSSQDNINDDIYNFYDNDKLPELRH
QSLADFDDLYPIENKFLFDPLDDDEDEDMSGGPPQMTTTTTIASFKCQTQTQQTTVTIYQ
THNRASSL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g8506.t1 Gene3D G3DSA:1.10.287.70 - 20 91 1.0E-5
1 g8506.t1 PANTHER PTHR11003 POTASSIUM CHANNEL, SUBFAMILY K 20 144 2.4E-24
2 g8506.t1 PANTHER PTHR11003:SF253 IP11374P 20 144 2.4E-24
6 g8506.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 38 -
7 g8506.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 39 66 -
5 g8506.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 67 308 -
3 g8506.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 39 61 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed