General information for g8518.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8518 is located on chr_2: 31113964..31115088 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8518 | g8518.t1 | isoform | g8518.t1 | 31113964 | 31115088 |
| chr_2 | g8518 | g8518.t1 | exon | g8518.t1.exon1 | 31113964 | 31114476 |
| chr_2 | g8518 | g8518.t1 | cds | g8518.t1.CDS1 | 31113964 | 31114476 |
| chr_2 | g8518 | g8518.t1 | exon | g8518.t1.exon2 | 31114531 | 31115088 |
| chr_2 | g8518 | g8518.t1 | cds | g8518.t1.CDS2 | 31114531 | 31115088 |
| chr_2 | g8518 | g8518.t1 | TSS | g8518.t1 | NA | NA |
| chr_2 | g8518 | g8518.t1 | TTS | g8518.t1 | NA | NA |
Sequences
>g8518.t1 Gene=g8518 Length=1071
ATGGACTTATTCACAAAGAGAATCAAGCGAAATTGGCTATTTTATCAAGACATGCCATCT
GCGAATCAATTGCATGAGGATTTCATGGACTTTATGAAGAATCGACCTGAATTCAATAAT
TTAATTAAAATTGGTAAAAGTTTTCTCAATGATGAAGGATATTCAAGCGGTGTAGTAAGT
TTGCGATACGACAAGGATGATCGATATGAGATGCTGACTGAACGCCATGTCTTTGCCGAA
TGCGCTTCAGAAAAACTGGCATTGAAAATTGAGCGCGCATTACAGATTATGGCTACTGAA
AATGATATATTGATTCCTGACAGTGACAGTGGTGAAGGAAACTCAAGCGGCAGTAAAATG
AAACGCTTCATTGTGTACATCACATGCTTAAAGAAGGATCTTGTTGTTTGTCCCATATGC
CACAAAGTGATGACCCGTGATGAGATGCTGGTACATCGTCTTGAGCACTGCAGTATTCGC
ACTGCATTAAAAACCAACATCTTGCTGGCAAAATTGGATTTAGAACTGCTTCCGGGACAT
TTATTTGAATCACGAGAATGGACAATTGAATGGCAAAAGACTACCAAGTGTGCATGGTGT
GGTACAAATTTTAAGAATCGCCATGCACTTCACGAGCATGAGAGAGAGCACTGCCCGAAG
AATCCCGACAAGCGAGATAAGGCAGTTTGTGAAGTTTGCAACATGTTGATCGGTGCTCGG
GATATGCCTCGTCACATGCTCACACACGATGGAATGAAGATGTGGACATGTGAAATTTGC
AAGGTCGAGATGAGAGCGGACAACAAAACGCGACACATGATAACACACAACAAAGAAAAT
TGCAATCTATGTGGAAAATTAATTTCAAAGCGCTACATGAAGAGGCATCTCGAGATTCAC
ACAAATGGAACACCAAAGAAAATTTGTCCTGTTTGCAAGAAGCTCATTACAAAGGACTTT
TATAACAAGCACTTAAAGATACAACACCCAGACTTTCACAATCCATCAGCCAAACCAAGC
ACTTCATCTGCAGGACGCATCACAAAATCAAAAACTGCACGCAAAAAATAA
>g8518.t1 Gene=g8518 Length=356
MDLFTKRIKRNWLFYQDMPSANQLHEDFMDFMKNRPEFNNLIKIGKSFLNDEGYSSGVVS
LRYDKDDRYEMLTERHVFAECASEKLALKIERALQIMATENDILIPDSDSGEGNSSGSKM
KRFIVYITCLKKDLVVCPICHKVMTRDEMLVHRLEHCSIRTALKTNILLAKLDLELLPGH
LFESREWTIEWQKTTKCAWCGTNFKNRHALHEHEREHCPKNPDKRDKAVCEVCNMLIGAR
DMPRHMLTHDGMKMWTCEICKVEMRADNKTRHMITHNKENCNLCGKLISKRYMKRHLEIH
TNGTPKKICPVCKKLITKDFYNKHLKIQHPDFHNPSAKPSTSSAGRITKSKTARKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g8518.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 233 | 302 | 8.0E-7 |
| 10 | g8518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 356 | - |
| 11 | g8518.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 348 | - |
| 1 | g8518.t1 | PANTHER | PTHR24377 | IP01015P-RELATED | 135 | 329 | 1.3E-15 |
| 2 | g8518.t1 | PANTHER | PTHR24377:SF809 | IP01015P-RELATED | 135 | 329 | 1.3E-15 |
| 9 | g8518.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 197 | 217 | - |
| 13 | g8518.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 195 | 222 | 11.261 |
| 4 | g8518.t1 | SMART | SM00355 | c2h2final6 | 135 | 156 | 11.0 |
| 3 | g8518.t1 | SMART | SM00355 | c2h2final6 | 195 | 217 | 0.16 |
| 6 | g8518.t1 | SMART | SM00355 | c2h2final6 | 228 | 249 | 79.0 |
| 8 | g8518.t1 | SMART | SM00355 | c2h2final6 | 255 | 276 | 22.0 |
| 5 | g8518.t1 | SMART | SM00355 | c2h2final6 | 279 | 300 | 26.0 |
| 7 | g8518.t1 | SMART | SM00355 | c2h2final6 | 307 | 329 | 32.0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
