General information for g8520.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8520 is located on chr_2: 31119574..31120123 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8520 | g8520.t2 | isoform | g8520.t2 | 31118889 | 31120123 |
| chr_2 | g8520 | g8520.t2 | exon | g8520.t2.exon1 | 31118889 | 31119494 |
| chr_2 | g8520 | g8520.t2 | cds | g8520.t2.CDS1 | 31118889 | 31119494 |
| chr_2 | g8520 | g8520.t2 | exon | g8520.t2.exon2 | 31119560 | 31120123 |
| chr_2 | g8520 | g8520.t2 | cds | g8520.t2.CDS2 | 31119560 | 31120123 |
| chr_2 | g8520 | g8520.t2 | TSS | g8520.t2 | 31120881 | 31120881 |
| chr_2 | g8520 | g8520.t2 | TTS | g8520.t2 | NA | NA |
Sequences
>g8520.t2 Gene=g8520 Length=1170
ATGGAGTCAACTGGAAGCAAACCTAATCAAGATTGGCAGCATTATTTTGATATCCCTTCA
AGAGAGCAGTTGCGAATCGATTTAGCAACATTTCTCTCAAAGCGACCTGAATTCAACGGA
TTAATTAAAATTGGAAAAACTTATTTGCGCGATGAGGAAAATTTTTCTAATGATGTTGTT
GTGAGCTCGAGATATGAAATTGACGATCGCTACGAGATGGTGAAGGCGAGAAATATATTT
GCAGAATGTGAAACGGAAGAACTCGCTCTCAAATTTGAACGCGCTTTGCAAGCAATAGCC
AAGGAAGCTGATTTATTGATACCTGGCAGTGATTTTTGTGAAGGAAGCTTTAGTGGCAAT
GCTAAACATCGCTTTGTAATTTATGTTACAAAGTTAAAAGAAAATTTATTTAAATGTGTT
GTTTGCTCGAAAGTGGCTACTCTTGATGACATGCAGGTGCATCATCTTGAGCATGACGGT
GTACGAACTGCATTGGCCACAAATAAGATTTTGAAAAAGTTAGGACGTAAGCAACTTCCA
GGACATTTAATTGAGCCACGAGAATGGACTGTTGAATCATTGATATCGCCGGTGTGCAGC
TATTGTGGCAGACAATTGAAGAATCGCCATGCACTGCACGAGCATGAGCGCGAACACTGC
CCGAACAACCCCAACAGACGCGATAAGGCAGTTTGTGAAGTGTGTGGCATGTTGATCGGT
GCTCGCGATATGGATCGTCATATGCTCACTCATGGCGATTCACACATGGTGAATTGTGAT
ATTTGTGGCACAAGGATGCGGGCTGATAACATGCCACGACATTTGCGAACACATGAGAAG
GCGACATGTGAAGTTTGTGGCAAAATTCTCTCTGTTCGCCATTTGCCCACTCATATGAAG
CTTCATACAGAGGGTCCAGCACAGAAGCAATGTCCGGTGTGTTCCAAGATGATCTCAAAG
AGTTTTTTTAATAAACATTTGAGAACACAATATAATGATGAAGCAACAACAAAACCATGC
CCAGTATGCGGAAGAATATTTGCTGAAAATTCATACAACAAGCATTTACGAACACAGCAT
CCTAATTACAAGAAGTCAGGCGTAGCAAAAGGTCGTGTCGAGAAGGCGAGCACTTCAAAG
GCATCATCATCATCATCCAGTAAGAAGTAA
>g8520.t2 Gene=g8520 Length=389
MESTGSKPNQDWQHYFDIPSREQLRIDLATFLSKRPEFNGLIKIGKTYLRDEENFSNDVV
VSSRYEIDDRYEMVKARNIFAECETEELALKFERALQAIAKEADLLIPGSDFCEGSFSGN
AKHRFVIYVTKLKENLFKCVVCSKVATLDDMQVHHLEHDGVRTALATNKILKKLGRKQLP
GHLIEPREWTVESLISPVCSYCGRQLKNRHALHEHEREHCPNNPNRRDKAVCEVCGMLIG
ARDMDRHMLTHGDSHMVNCDICGTRMRADNMPRHLRTHEKATCEVCGKILSVRHLPTHMK
LHTEGPAQKQCPVCSKMISKSFFNKHLRTQYNDEATTKPCPVCGRIFAENSYNKHLRTQH
PNYKKSGVAKGRVEKASTSKASSSSSSKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g8520.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 240 | 304 | 6.0E-6 |
| 13 | g8520.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 305 | 367 | 2.0E-5 |
| 12 | g8520.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 389 | - |
| 1 | g8520.t2 | PANTHER | PTHR24390:SF164 | IP01252P-RELATED | 132 | 328 | 1.5E-28 |
| 3 | g8520.t2 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 132 | 328 | 1.5E-28 |
| 2 | g8520.t2 | PANTHER | PTHR24390:SF164 | IP01252P-RELATED | 272 | 371 | 1.5E-28 |
| 4 | g8520.t2 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 272 | 371 | 1.5E-28 |
| 11 | g8520.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 199 | 219 | - |
| 15 | g8520.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 197 | 224 | 10.325 |
| 5 | g8520.t2 | SMART | SM00355 | c2h2final6 | 137 | 158 | 13.0 |
| 8 | g8520.t2 | SMART | SM00355 | c2h2final6 | 197 | 219 | 0.51 |
| 7 | g8520.t2 | SMART | SM00355 | c2h2final6 | 230 | 251 | 31.0 |
| 6 | g8520.t2 | SMART | SM00355 | c2h2final6 | 257 | 278 | 29.0 |
| 10 | g8520.t2 | SMART | SM00355 | c2h2final6 | 281 | 302 | 20.0 |
| 9 | g8520.t2 | SMART | SM00355 | c2h2final6 | 338 | 360 | 5.7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
