General information for g8521.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8521 is located on chr_2: 31120301..31121753 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8521 | g8521.t1 | isoform | g8521.t1 | 31120301 | 31121753 |
| chr_2 | g8521 | g8521.t1 | exon | g8521.t1.exon1 | 31120301 | 31120903 |
| chr_2 | g8521 | g8521.t1 | cds | g8521.t1.CDS1 | 31120301 | 31120903 |
| chr_2 | g8521 | g8521.t1 | exon | g8521.t1.exon2 | 31121064 | 31121264 |
| chr_2 | g8521 | g8521.t1 | cds | g8521.t1.CDS2 | 31121064 | 31121264 |
| chr_2 | g8521 | g8521.t1 | exon | g8521.t1.exon3 | 31121460 | 31121753 |
| chr_2 | g8521 | g8521.t1 | cds | g8521.t1.CDS3 | 31121460 | 31121753 |
| chr_2 | g8521 | g8521.t1 | TSS | g8521.t1 | NA | NA |
| chr_2 | g8521 | g8521.t1 | TTS | g8521.t1 | NA | NA |
Sequences
>g8521.t1 Gene=g8521 Length=1098
ATGGAGTCAATTGGAAGCAAAACCGATCAGGATTGGCGACAATATGAAGAAATCCCTTCA
AGAGAGCAACTGCGAATCGATTTGGCGACTTTTCTCTCAAAGCGACCTGAATTTAATGGA
CCAATTAAAATTGGCAAAAGTTTTCTTCGTGAAAAAAAATATTCAAATAGTGTTCTTGTG
AGCTCGCGATACAGCTGGACGGATGAGTTTGAAGTGTTGAAGACAAGAAATATATTCGCA
GAATGTGAAACTGAAGAGCTTGCACTTCAAATTGAACGTGCATTACAAGACATAGCCATT
GACTTGGGCATACTAATACCTGGCAGTGACAAGTGTGAAGGAAGTTTGAGTAAGGAAAAT
CATCGCTTCATTGTTTATGTAACAAAGCAAAAGTCAATTGAAGATCGATGTTTGGGATGT
GAGAGATATTACTCGCGAGGCAAGAAGTCTCACATGCTCAAGCATCATATGGGTTTTGTT
CGAGCTTGGCGAGACTGCAGGCAAGATATAATTGATGCTAAGTTGGAGGGAACAAAGGAG
GGGAGACAAATTTTGGAAAATTGTGCAAGAATGTTGAAGTGGGTCGATATGGACGATGAT
GATAGAACTGTGCTGCTAAGCCTTCAAGCTCTTCTCGCCGCTGCTGAACCAGATGATCCT
CAAGATGCTGTTGTTGCTAATCAATATAAAGAAAATTACGAAATGTTTTGTAAAACTGCT
AAGCATTGGACAAATGTTTATGCAAAAGGCCCACATAAAATTCCAGAATTTGATACAAAA
GTGCAGACTCTTAAAAATATAGGAGAAATTAATGATGCATTTGAAAATCTCAAGATAAAG
CGAGAGAAGCAAAAGAATTTTGCAAAACAAAATGCAAATTTGCAAATACAATTGGAAGAT
AATATAAATCGTAATGAACAACTGCACGGTATGATTGAAAATGGACGCCTTCGTGATCGT
TTGGCAGCAAATATTGAAATGCTCAAAAAGAAGAAAGCTTGGCAAGAATATAATGAATGT
AAATTAAAGTATGATGAGGCTGATAGCGATGTTAAGAAACTCAACAGGTTAAAGAAAAAA
CAAACAGGATTGTTGTGA
>g8521.t1 Gene=g8521 Length=365
MESIGSKTDQDWRQYEEIPSREQLRIDLATFLSKRPEFNGPIKIGKSFLREKKYSNSVLV
SSRYSWTDEFEVLKTRNIFAECETEELALQIERALQDIAIDLGILIPGSDKCEGSLSKEN
HRFIVYVTKQKSIEDRCLGCERYYSRGKKSHMLKHHMGFVRAWRDCRQDIIDAKLEGTKE
GRQILENCARMLKWVDMDDDDRTVLLSLQALLAAAEPDDPQDAVVANQYKENYEMFCKTA
KHWTNVYAKGPHKIPEFDTKVQTLKNIGEINDAFENLKIKREKQKNFAKQNANLQIQLED
NINRNEQLHGMIENGRLRDRLAANIEMLKKKKAWQEYNECKLKYDEADSDVKKLNRLKKK
QTGLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8521.t1 | Coils | Coil | Coil | 337 | 357 | - |
| 5 | g8521.t1 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 186 | 252 | 2.8E-12 |
| 2 | g8521.t1 | PANTHER | PTHR24068:SF147 | UBIQUITIN-CONJUGATING ENZYME E2 K | 202 | 280 | 3.7E-16 |
| 3 | g8521.t1 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 202 | 280 | 3.7E-16 |
| 1 | g8521.t1 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 202 | 243 | 5.0E-5 |
| 7 | g8521.t1 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 183 | 238 | 8.509 |
| 4 | g8521.t1 | SUPERFAMILY | SSF54495 | UBC-like | 202 | 255 | 1.47E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
