General information for g8532.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lambda-crystallin-like protein.
Parent gene
- The parent gene g8532 is located on chr_2: 31139518..31140072 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8532 | g8532.t9 | isoform | g8532.t9 | 31139518 | 31139967 |
| chr_2 | g8532 | g8532.t9 | exon | g8532.t9.exon1 | 31139518 | 31139701 |
| chr_2 | g8532 | g8532.t9 | cds | g8532.t9.CDS1 | 31139632 | 31139701 |
| chr_2 | g8532 | g8532.t9 | exon | g8532.t9.exon2 | 31139756 | 31139967 |
| chr_2 | g8532 | g8532.t9 | cds | g8532.t9.CDS2 | 31139756 | 31139967 |
| chr_2 | g8532 | g8532.t9 | TTS | g8532.t9 | 31140081 | 31140081 |
| chr_2 | g8532 | g8532.t9 | TSS | g8532.t9 | NA | NA |
Sequences
>g8532.t9 Gene=g8532 Length=396
CTTTCTCGTGAAATTGAGGGATTTGCATTGAATCGAATTCAATATGCAATTTTAAATGAA
TGCTGGCGTTTAATTGCTGATGGTATTTTGGATGTTAAAGATATTGATTCAGTAATGTCT
GATGGATTGGGAATGAGATATGCTTTCCTAGGGCCAATGGAGACAGCTCATTTAAATGCA
GAAGGTTTCCTTTCATATTGCGATCGATATTCAAAGACAATTTATGCTGTCAGTGAAACG
ATGGGACCAGTTCCGAAAATGGAAGGTCCCGTTATGGAGCAAGTTGCTAAGGAATTGGAA
CAAATGTGTCCTCTTGAAGATTTAGAAAAACGCCGAAAGTGGCGCGACACATGTTTAACA
GAGTTGAGTAAGATGAAAAAAGAATTAAATGATTGA
>g8532.t9 Gene=g8532 Length=93
MSDGLGMRYAFLGPMETAHLNAEGFLSYCDRYSKTIYAVSETMGPVPKMEGPVMEQVAKE
LEQMCPLEDLEKRRKWRDTCLTELSKMKKELND
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8532.t9 | Coils | Coil | Coil | 81 | 93 | - |
| 3 | g8532.t9 | Gene3D | G3DSA:1.10.1040.10 | - | 1 | 93 | 4.2E-30 |
| 1 | g8532.t9 | PANTHER | PTHR48075 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN | 1 | 92 | 2.7E-24 |
| 2 | g8532.t9 | PANTHER | PTHR48075:SF1 | LAMBDA-CRYSTALLIN HOMOLOG | 1 | 92 | 2.7E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
