General information for g8535.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Decaprenyl-diphosphate synthase subunit 2.
Parent gene
- The parent gene g8535 is located on chr_2: 31148651..31149264 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8535 | g8535.t7 | isoform | g8535.t7 | 31147926 | 31149264 |
| chr_2 | g8535 | g8535.t7 | exon | g8535.t7.exon1 | 31147926 | 31147936 |
| chr_2 | g8535 | g8535.t7 | exon | g8535.t7.exon2 | 31147991 | 31149264 |
| chr_2 | g8535 | g8535.t7 | cds | g8535.t7.CDS1 | 31148163 | 31148651 |
| chr_2 | g8535 | g8535.t7 | TTS | g8535.t7 | 31149260 | 31149260 |
| chr_2 | g8535 | g8535.t7 | TSS | g8535.t7 | NA | NA |
Sequences
>g8535.t7 Gene=g8535 Length=1285
GCTGGATTAAGAAATCAAGAACTAATTGAGTTAATTTCATCAGCGGTGCGTGATCTTGCA
GAATCAAATTTTATCGGTGATAGAGATGATGAAAATGTTGCCCTTCCATCAGATCCAAAG
TGCAAAATTCACATTGAAGATGAAAGTCCGTTAGAACATTTTGAAAGTACAAAAGATATT
GATATGAGTCTTATTTTGGGACATCCAGAAAGAGAATGGTCATTTCGTCATACTCTTGCA
TCAGGATCACTTTTAGGCAAGAGTTGTCAAGGAACATTGAAGCTTGCAGGACAATCGGAA
GAACTTCAAAGACATGGATATTCATTTGGAAAGCACTTGGCTCTTGCATGGCAAGCGAGT
ATGGATTTAGAGCCATTTAGAATGCAAGAATTACCTTATAACACTTCATTTAGTCTCATA
AGTGCTCCAGTTCTCTTTCAACTTGACCATGATCCATCATTATATGAAGAAATCAAAAAA
GGACGAAAATCTGTTGAAGAAATCAATTACAGAAAAATTCATGAAGCTGTCTTAAGTGGT
CCAGGAATTGAACAAACCAAAGAACTGCAACGAAAACATGGACAAGCAGCAATGGATGTA
TTAAATGAATTTCCAAATTGTGATGCACGTACAGCTCTTCAAAATATAATCATGGCAATG
CAGTGTCTCTGAAATTTGCTTAAATTCCACCAGTTACTCTTAAAAATATAGAGTTTTTCT
GAGTGGATGACAAAAAGTTTTTTTATAAATAGCACAATGGTGATGGAGTTTATTAAAATT
AAAAAGATTTGATATTTGGTGGTCAAAATCAAATCATAATATTGAGATATTACTGTAGAT
TAGACTGAATTTAGTTTAATTATGAAATAGCACAAGAATCAAAGATTAGAAAGAGACTTG
AGTTCTCATTTTGATGATGCTAAATGAATTAATTTAATTAACTCAATTTATTAGATCACA
TAATTATTTTGTTTTCAATTTGAATCAAAATACAGGTAGAAATAATCTAATCAAATGCAA
CCTTGAAAGGTGAAATGCTATGATATTAGTTAATTTTGAACCATGAAATCGTTCAAAGAA
AAAAATGTAGTCTCATCGTGATAAAATTAAATATCGGGTGCTAATTGTTTGGAAAATCAC
GGAAAAAAAACATTTTGTGATTAAAAGAAATATTCAAAGAAGTGTTTCTCACAAAATACA
CAAACTATAAAATATTGTTATTAATTTTATACGTCAAAGATTAGGACTGTGTAAAACAAT
AAAAATAAAAATGATTTGAATAAAA
>g8535.t7 Gene=g8535 Length=162
MSLILGHPEREWSFRHTLASGSLLGKSCQGTLKLAGQSEELQRHGYSFGKHLALAWQASM
DLEPFRMQELPYNTSFSLISAPVLFQLDHDPSLYEEIKKGRKSVEEINYRKIHEAVLSGP
GIEQTKELQRKHGQAAMDVLNEFPNCDARTALQNIIMAMQCL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8535.t7 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 6 | 160 | 0 |
| 1 | g8535.t7 | PANTHER | PTHR12001:SF55 | DECAPRENYL-DIPHOSPHATE SYNTHASE SUBUNIT 2 | 8 | 160 | 0 |
| 2 | g8535.t7 | PANTHER | PTHR12001 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE | 8 | 160 | 0 |
| 3 | g8535.t7 | SUPERFAMILY | SSF48576 | Terpenoid synthases | 8 | 158 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
