General information for g8537.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Decaprenyl-diphosphate synthase subunit 2.
Parent gene
- The parent gene g8537 is located on chr_2: 31153293..31155262 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8537 | g8537.t1 | isoform | g8537.t1 | 31153293 | 31155262 |
| chr_2 | g8537 | g8537.t1 | exon | g8537.t1.exon1 | 31153293 | 31153549 |
| chr_2 | g8537 | g8537.t1 | cds | g8537.t1.CDS1 | 31153293 | 31153549 |
| chr_2 | g8537 | g8537.t1 | exon | g8537.t1.exon2 | 31153636 | 31153677 |
| chr_2 | g8537 | g8537.t1 | cds | g8537.t1.CDS2 | 31153636 | 31153677 |
| chr_2 | g8537 | g8537.t1 | exon | g8537.t1.exon3 | 31154191 | 31154517 |
| chr_2 | g8537 | g8537.t1 | cds | g8537.t1.CDS3 | 31154191 | 31154517 |
| chr_2 | g8537 | g8537.t1 | exon | g8537.t1.exon4 | 31154575 | 31155262 |
| chr_2 | g8537 | g8537.t1 | cds | g8537.t1.CDS4 | 31154575 | 31155262 |
| chr_2 | g8537 | g8537.t1 | TSS | g8537.t1 | NA | NA |
| chr_2 | g8537 | g8537.t1 | TTS | g8537.t1 | NA | NA |
Sequences
>g8537.t1 Gene=g8537 Length=1314
ATGTCACTAAGCCGCATCTACTCGACAAGAAAATTTCTCACAAATTTCAATATGAAATTT
CATCAAATAAAAAATGCGAGATTGATATCATCGACTATGGAATCGCGAGAAAAATTGGCG
ACTAGCAAGATGGTAGCGAAAAATGAGTGGAACAGAGCATTGAGTGAAGCTGAAAAAATT
GTGGGCTATCAAACGTCGTTTTTGAGCTTACGATATTTACTCAGTGATGAAATCACAAAT
CTTGCTCTTCATCTCAGAAAATTGATAGGTTCTGCTCATCCTTTAGTGAATACAGCAAAA
TCGTTGATTTATGGACAAAATAATTTACAAACATGGGGATTGATTGTATTATTGGTGTCA
AAAGCAGCAGGTCACGCAGCAGATGTTCCTGAAATGGAGCAAGACAAAAGTGCAGGAGTT
TTAATTTCTCAACGAACACTTGCAGAAGTAGTTGAGATGGTTCGAACTGCAAATTTAATC
CATCAAGGTGTATTCAATTTACAACATCTACAAAATGCAGGAAATAACTTGTCATCTGAC
TCGGATATGATTTTTGGAAACAAAATTGCTCTTTTGGGTGGTGACTATTTGTTAGGATCA
GCTTGTGCTCAAATAGGAAGATTAAAGAATCAAGAATTAAATGAATTAATGTGCACAGCC
TTCAGGGATATGGCTGACTCGCATTTTATTGGTGAACGTGATGTTCAAAATATTCCACTT
CCAGCAGATCCAAAAAAGAAAGCAGAAGAACAAGAAGCAACAGAAAAAGCTATCAAAGAA
ATTCCAATAGATCGAGTTGATAATAAAAAGCCATTTAATTTACAATCAGTGATGGGAAGT
CCAGAAGATGAATGGACATTGAGACACACTCTTGCAGAAGGGACTCTTTTAGGAAAAAGT
TGTCAAAGTGCATTATTGCTTGCAAAACAGCCAGAAGAGTTACAGAGACAAGCCTATTTC
TTTGGAAAACATTTGTCATTAGCGTGGCAAGCAAGTATCGATCTTGAACCATTTAGATTG
AATAAATTGCCACCTGATGCAAAAATCAGTTTGATCAGTGCGCCTGTACTATTTCATCTT
GAGCATGATCCAACATTATACGAAAGAGAAATTAAGAAAGGAATTGAATCTGTTGATGAC
ATTGATTATCAAAAAGTTCATTCAGAAATTTTGAATAGTAGCTTAGCAATTGAAAAGACA
AGAGAACTGCAGAGCAAACATACACTACTTGCCATGGCTGAGCTCTATAAATTTCCAAAT
TGTGACGCACGAACTGCACTTGAAAACATTATTATGGCAATGCAAGATAATTAA
>g8537.t1 Gene=g8537 Length=437
MSLSRIYSTRKFLTNFNMKFHQIKNARLISSTMESREKLATSKMVAKNEWNRALSEAEKI
VGYQTSFLSLRYLLSDEITNLALHLRKLIGSAHPLVNTAKSLIYGQNNLQTWGLIVLLVS
KAAGHAADVPEMEQDKSAGVLISQRTLAEVVEMVRTANLIHQGVFNLQHLQNAGNNLSSD
SDMIFGNKIALLGGDYLLGSACAQIGRLKNQELNELMCTAFRDMADSHFIGERDVQNIPL
PADPKKKAEEQEATEKAIKEIPIDRVDNKKPFNLQSVMGSPEDEWTLRHTLAEGTLLGKS
CQSALLLAKQPEELQRQAYFFGKHLSLAWQASIDLEPFRLNKLPPDAKISLISAPVLFHL
EHDPTLYEREIKKGIESVDDIDYQKVHSEILNSSLAIEKTRELQSKHTLLAMAELYKFPN
CDARTALENIIMAMQDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8537.t1 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 64 | 259 | 0.0e+00 |
| 6 | g8537.t1 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 268 | 436 | 0.0e+00 |
| 2 | g8537.t1 | PANTHER | PTHR12001:SF55 | DECAPRENYL-DIPHOSPHATE SYNTHASE SUBUNIT 2 | 29 | 435 | 0.0e+00 |
| 3 | g8537.t1 | PANTHER | PTHR12001 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE | 29 | 435 | 0.0e+00 |
| 1 | g8537.t1 | Pfam | PF00348 | Polyprenyl synthetase | 112 | 372 | 4.6e-06 |
| 4 | g8537.t1 | SUPERFAMILY | SSF48576 | Terpenoid synthases | 60 | 434 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008299 | isoprenoid biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
