General information for g8538.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8538 is located on chr_2: 31156602..31157131 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8538 | g8538.t4 | TSS | g8538.t4 | 31155464 | 31155464 |
| chr_2 | g8538 | g8538.t4 | isoform | g8538.t4 | 31155759 | 31156952 |
| chr_2 | g8538 | g8538.t4 | exon | g8538.t4.exon1 | 31155759 | 31155819 |
| chr_2 | g8538 | g8538.t4 | cds | g8538.t4.CDS1 | 31155759 | 31155819 |
| chr_2 | g8538 | g8538.t4 | exon | g8538.t4.exon2 | 31156221 | 31156408 |
| chr_2 | g8538 | g8538.t4 | cds | g8538.t4.CDS2 | 31156221 | 31156408 |
| chr_2 | g8538 | g8538.t4 | exon | g8538.t4.exon3 | 31156585 | 31156952 |
| chr_2 | g8538 | g8538.t4 | cds | g8538.t4.CDS3 | 31156585 | 31156779 |
| chr_2 | g8538 | g8538.t4 | TTS | g8538.t4 | 31157337 | 31157337 |
Sequences
>g8538.t4 Gene=g8538 Length=617
ATGGATGAAAAACAGCCATTGCTTAAAAATGGAAATGAAAATCAGGATGTTGAGAATGCA
GGAGATAGTGCAGTTCAACAGCAAACATCTGGATTTAGTGTCCCGCAAGATGAACTTCCT
CCTCCATATACGTCGAATGAGGAGCGAGGATTGCCAATGGTCACTTGTCGCGTTTGTTCT
GCAATGATTGACATCTCTTGGAAGCGAGAACAACATGTTGTCAAATGTAACCAATGCAAT
GAAGCAACGAAGAAATGCTCCACCAGGAAAAAAATACGTCAGATGTCCATGCAATTGTTT
GTTAATTTGCAAGAGCTCTTCTCAACGTGTTGCATGTCCACGACCAAATTGCAAACGAAT
CATCAATTTAGCACCAAGTCCTGTTACGCCACCTGTTCCGACAATGCCGGGAATGTGCCG
AGTAACTTGTGGCCATTGTCATGATACTTTCTTATTCAATACGCTCACAAATGCGCTAGC
TAGATGCCCACATTGTCGTAAAGTCTCTTCAGTTGGTGTGGAATTTGCAAAAAATCGAAG
CAATGTCTATCTTGCTCTTGGAATAGTTTTTCTTGCCATCGGTTTTGCAATTTTGTGGGC
TACATATTCATATGCAT
>g8538.t4 Gene=g8538 Length=147
MDEKQPLLKNGNENQDVENAGDSAVQQQTSGFSVPQDELPPPYTSNEERGLPMVTCRVCS
AMIDISWKREQHVVKCNQCNEATKKCSTRKKIRQMSMQLFVNLQELFSTCCMSTTKLQTN
HQFSTKSCYATCSDNAGNVPSNLWPLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8538.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - |
| 4 | g8538.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 35 | - |
| 2 | g8538.t4 | PANTHER | PTHR21014:SF6 | PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 4-PHOSPHATASE | 2 | 84 | 8.0E-14 |
| 3 | g8538.t4 | PANTHER | PTHR21014 | UNCHARACTERIZED | 2 | 84 | 8.0E-14 |
| 1 | g8538.t4 | Pfam | PF09788 | Transmembrane protein 55A | 2 | 85 | 6.4E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0034597 | phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity | MF |
| GO:0046856 | phosphatidylinositol dephosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed