Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione hydrolase 1 proenzyme.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8547 g8547.t2 isoform g8547.t2 31227719 31228289
chr_2 g8547 g8547.t2 exon g8547.t2.exon1 31227719 31228289
chr_2 g8547 g8547.t2 cds g8547.t2.CDS1 31227720 31228289
chr_2 g8547 g8547.t2 TSS g8547.t2 31228322 31228322
chr_2 g8547 g8547.t2 TTS g8547.t2 NA NA

Sequences

>g8547.t2 Gene=g8547 Length=571
ATGAAGCATCATATGAGTAAAACGACAGCTATTGCTACTGCCGTTCTTATCGTCTTTATC
ATTAGTTTAGGCATTCTGTTATGGTTTGCTTATCATCAAGGTCTAATTGATGATGGTTTG
TCAACAGCTGCTGTAGCTACAACGTCCGATGAGTGTACAGATGCTGCTGTATTAATTTTA
AAGCAAGGTGGTTCGGCTGCCGATGCTGCAATATGCGCATCATTATGCCAAGGTATAGTT
GTACCGCAGGCTAGCGGTATAGGAGGTGGATTTCTTGCAACCATATATACAAAAAACACT
GCCGAGATAGTAACATTGAATTCAAGAGAAGTTGCACCATTGAAAGCCACACAAGAACTT
TATTTAGATAACGAACGTGCTACCGTTGAAGGCGGACTTTCAATTGCTGTTCCTACTGAA
GTAAAAGGCTTACACGAACTCCATCGACGTTTCGGGAAATTGAGTTGGAGTCGTGTGCTT
GAACCGGCAATTCATGTTGCAGAAAAAGGCTTTAAAGTACCAAATTATTTGGCACGAGTG
TTGAGCCAATATGAAGAAAAGATAAGAAGGA

>g8547.t2 Gene=g8547 Length=190
MKHHMSKTTAIATAVLIVFIISLGILLWFAYHQGLIDDGLSTAAVATTSDECTDAAVLIL
KQGGSAADAAICASLCQGIVVPQASGIGGGFLATIYTKNTAEIVTLNSREVAPLKATQEL
YLDNERATVEGGLSIAVPTEVKGLHELHRRFGKLSWSRVLEPAIHVAEKGFKVPNYLARV
LSQYEEKIRR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g8547.t2 PANTHER PTHR11686 GAMMA GLUTAMYL TRANSPEPTIDASE 7 189 9.1E-53
3 g8547.t2 PANTHER PTHR11686:SF51 GAMMA-GLUTAMYL TRANSPEPTIDASE, ISOFORM A 7 189 9.1E-53
4 g8547.t2 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 65 90 6.9E-26
6 g8547.t2 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 134 152 6.9E-26
5 g8547.t2 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 152 171 6.9E-26
1 g8547.t2 Pfam PF01019 Gamma-glutamyltranspeptidase 59 189 1.3E-46
9 g8547.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
11 g8547.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 31 -
10 g8547.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 32 190 -
8 g8547.t2 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 42 188 5.98E-47
7 g8547.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 9 31 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006751 glutathione catabolic process BP
GO:0036374 glutathione hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed