Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8558 g8558.t1 TTS g8558.t1 31316628 31316628
chr_2 g8558 g8558.t1 isoform g8558.t1 31316844 31318091
chr_2 g8558 g8558.t1 exon g8558.t1.exon1 31316844 31318091
chr_2 g8558 g8558.t1 cds g8558.t1.CDS1 31316844 31318091
chr_2 g8558 g8558.t1 TSS g8558.t1 31318166 31318166

Sequences

>g8558.t1 Gene=g8558 Length=1248
ATGGAACAAATAGTGAAATTTAATTTTCTGTACGGAATTTGGAATAATACAAGAAGGTAC
ATATGTCAAATTGAAAATCAAGAAATTGGAAGTGAATCTCCTTTGAAGTTCGTTGGCAAA
CATGCTGATGGAAAAACTAATTATGATGTGAATTTAGTTTTCTTTGAAAAATGTAAAATT
AGCAAAATTCCAAAAGGAATTATGAAAACTTTTCCAAATTCAAAAATTCTGGTAATTAAC
AATTCAAAATTAAAAACAATTATACGAGATGACTTAAAAGAAAATAAAAATTTAGAAGAA
TTGTATTTGGTCAAAAATAATATTACTTTTTTACCAGGTGATTTACTTAAAGATTTAAAT
AAACTTACTGCATTTTCTGTAACTTATTCGAAAATTGAATTGATTGAACCAAATATTTTT
GACAAACTAACTAATTTGAACTGTGTAGATTTAAGTGGAAATATTTGTATCGATAAACGC
TTCAATTCTGTGGAACCTAACTTACAAAATGCAACACTTGATGAAATAAAAACAGAATTA
CAAAATATTTATCCAACTTGGGGAGATGAAGTGAAAAATTTTAAAGGTGAAATTACATCT
GAAGTTTTAAAAACGCTTAAAGAAAAAAATTCAATTAAGAAGCAAAAGACTGAAGTTAAG
AATAAAAATTTCCAACTTAAATCTGATTTTATCCAAGATTTCAAAGCTATTATGGAAAAT
GAAGATTTTAAAGATTTTACAATCAAAATTGGTTCAATGGAATTCAAAGCTCATAAATTT
GTTCTTGTTGCTCGTAGTCCAACTTTTGCAAACATTATCAAAGAAAACGTCCATGCTGAA
TACTTGAATCTTCTTGATATTTCAACCGATATTTTTCAAGTTATTTTGGATTTCATTTAT
ACTGATGAATTTCCTGAAAATATTCAGATCGACAAAATTGAACTTTTCAAAGTCAGTGAA
AGATTGAAAATTGAAAAATTAAAAAACTTTGCTGCTGAGAAGCTTCTCGATGAAATAAAT
TCTGAAAATGCTTTGGAAATTTTGAAGTTGAGCATCAAATACAAAAATGATCAATTAAGA
CAAAAATCATTTGAAGAAATCAAAAAAATTTTAGATTTCATAGAAATTGATGACAATTTG
GCATTTGAACCAGAAAAACTTGAAGAACTCATTGAAATTAAAAATGAGAAGGAACAAATA
TTGAGAGAAATTGAAGAACGTTTTAAAAATGTTCTTATTCGAAAGTAA

>g8558.t1 Gene=g8558 Length=415
MEQIVKFNFLYGIWNNTRRYICQIENQEIGSESPLKFVGKHADGKTNYDVNLVFFEKCKI
SKIPKGIMKTFPNSKILVINNSKLKTIIRDDLKENKNLEELYLVKNNITFLPGDLLKDLN
KLTAFSVTYSKIELIEPNIFDKLTNLNCVDLSGNICIDKRFNSVEPNLQNATLDEIKTEL
QNIYPTWGDEVKNFKGEITSEVLKTLKEKNSIKKQKTEVKNKNFQLKSDFIQDFKAIMEN
EDFKDFTIKIGSMEFKAHKFVLVARSPTFANIIKENVHAEYLNLLDISTDIFQVILDFIY
TDEFPENIQIDKIELFKVSERLKIEKLKNFAAEKLLDEINSENALEILKLSIKYKNDQLR
QKSFEEIKKILDFIEIDDNLAFEPEKLEELIEIKNEKEQILREIEERFKNVLIRK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g8558.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 245 322 7.6451E-16
8 g8558.t1 Coils Coil Coil 387 414 -
6 g8558.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 11 231 4.3E-19
7 g8558.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 232 374 8.5E-28
3 g8558.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 162 390 1.4E-21
1 g8558.t1 Pfam PF13855 Leucine rich repeat 97 154 1.6E-9
2 g8558.t1 Pfam PF00651 BTB/POZ domain 234 335 6.9E-17
11 g8558.t1 ProSiteProfiles PS50097 BTB domain profile. 244 308 15.949
10 g8558.t1 SMART SM00225 BTB_4 244 339 1.8E-15
4 g8558.t1 SUPERFAMILY SSF52058 L domain-like 54 154 5.83E-17
5 g8558.t1 SUPERFAMILY SSF54695 POZ domain 227 337 1.66E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed