Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8559 g8559.t1 TSS g8559.t1 31323373 31323373
chr_2 g8559 g8559.t1 isoform g8559.t1 31323452 31324171
chr_2 g8559 g8559.t1 exon g8559.t1.exon1 31323452 31324171
chr_2 g8559 g8559.t1 cds g8559.t1.CDS1 31323452 31324171
chr_2 g8559 g8559.t1 TTS g8559.t1 31324504 31324504

Sequences

>g8559.t1 Gene=g8559 Length=720
ATGACAGCAAGCCAACAAATAATAAAATGTAGATGTGAAAATTATTTCTGGAATTATAGT
GGAGAAAATTACACATGTTTTATTGAAAATCAAGAAATTGGAAGTGAATCTCCTTTGAAA
TTTGATAGCAGTTATACTAATGGAAAATCTAATTACGATGTTCATCGAGTTTTCTTTAAA
AACTGTAAAATTAGCAAAATTCCAAAAGGAATTATGAAAATTTTTCCAAATTCAAAAGTT
TTGGTAATTTACAATTCAAAATTAAAAACAATTAGACGAGATGACTTAAAAGAATACAAA
AATTTAGAAGAATTGTGTTTGGACAAAAATGATATTGCTTTCTTACCAGGTGATTTACTT
GAAGATTTAAATAAACTTACTGCATTTTCTGCAACTTATTCCAAAATTGAATTGATTGAA
CCAAACATTTTTGACAAACTAACTAATTTAAACTGTGTAGATTTAAAAGGAAATATTTGC
ATTGATAAACACTTCAATTCTGTGAAACCTAACTTACAAAATGCAACACTTGATGAAATA
AAAACAGAATTACAAAATATTTATCCAACTTGGGGAGATGAAGTGAAAAATTTTAAAGGT
GAAATTACATCTGAACTTCTAAAATTATTTAAAGAAAAAGATTCAATTAAGAAAGATCAT
GAAATTATGAAAAAGAAATTGACTGCAGTTGCAAATACAATTTTGAAAAATTGTAAATAA

>g8559.t1 Gene=g8559 Length=239
MTASQQIIKCRCENYFWNYSGENYTCFIENQEIGSESPLKFDSSYTNGKSNYDVHRVFFK
NCKISKIPKGIMKIFPNSKVLVIYNSKLKTIRRDDLKEYKNLEELCLDKNDIAFLPGDLL
EDLNKLTAFSATYSKIELIEPNIFDKLTNLNCVDLKGNICIDKHFNSVKPNLQNATLDEI
KTELQNIYPTWGDEVKNFKGEITSELLKLFKEKDSIKKDHEIMKKKLTAVANTILKNCK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g8559.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 4 192 0
1 g8559.t1 SUPERFAMILY SSF52058 L domain-like 56 158 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed