General information for g8567.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dual specificity mitogen-activated protein kinase kinase 7.
Parent gene
- The parent gene g8567 is located on chr_2: 31369927..31373718 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8567 | g8567.t6 | isoform | g8567.t6 | 31367577 | 31369209 |
| chr_2 | g8567 | g8567.t6 | exon | g8567.t6.exon1 | 31367577 | 31367932 |
| chr_2 | g8567 | g8567.t6 | exon | g8567.t6.exon2 | 31368147 | 31368200 |
| chr_2 | g8567 | g8567.t6 | exon | g8567.t6.exon3 | 31368497 | 31368852 |
| chr_2 | g8567 | g8567.t6 | cds | g8567.t6.CDS1 | 31368497 | 31368852 |
| chr_2 | g8567 | g8567.t6 | exon | g8567.t6.exon4 | 31368920 | 31369145 |
| chr_2 | g8567 | g8567.t6 | cds | g8567.t6.CDS2 | 31368920 | 31368971 |
| chr_2 | g8567 | g8567.t6 | exon | g8567.t6.exon5 | 31369207 | 31369209 |
| chr_2 | g8567 | g8567.t6 | TSS | g8567.t6 | 31369942 | 31369942 |
| chr_2 | g8567 | g8567.t6 | TTS | g8567.t6 | NA | NA |
Sequences
>g8567.t6 Gene=g8567 Length=995
GCTACTGTGAATGCATTAAATTATCTGAAAATTAAACATGGAGTTATTCATAGAGATGTC
AAACCTAGTAATATTCTAATAGATGAACATGGAATAATTAAACTATGTGACTTTGGAATA
AGTGGTCGTTTAGTTGACTCAAAAGCAAAAACACGCTCAGCTGGCTGCGCAGCATATATG
GCTCCCGAAAGAATCGATCCAAAAAAACCTGAGTACGATATTCGTGCAGATGTTTGGTCA
TTAGGGATAACATTAGTTGAATTGGCTACAGGAGCGTACCCTTATAAAGACTGCAAAACT
GACTTCGAAGTGCTCACTAAAGTATTAGATTCCGAACCGCCTTCACTGCCTGATGATCAA
GGTTTTAGTGAAGATTTTAAGGACTTTGTAAAGCGATGCCTAACGAAGGACTATAAACAA
CGACCTAAATATAATCAACTGCTAGAACATCCTTTCCTTAATAATCCTGATCCCCAAAAA
TTAGTTAATGTATCCGCATGGTTTCATGCTGTAACTAAAGAAGCTGGAATTGTCTTACCA
ACACAAGATTCGCCAAATCTAACTGCCTCGCATTTAAATAGGTAAGTAATTCAAATTTTT
AATGAAATAAAAATTAATTTGTATCAAATTTTCTTTTGCAATTTCCTCACTTCAATCAGT
CTCAGTCTCATCAACGCAAATACAGCAGCATCAACAGCCTTTAGTTATGGCAAAAGAAAG
TAGTAGTGTAACAGATGGTAATAACTTTTCATCTATGAATATGAATCCTTTTTCTCCTCC
TTCTTCTACGACTTCATTCACTTCGCCTCAATTTCAAATGAATAACACAATTGAACGTGA
GATGTCAACGACAAATAGAAATATCGAAAATATCTTTCCATGTACGTCAAACTATCAACA
ACAACAGCAGCAGCAAGCGGCATCGATTTATGGCAAAATAAATGATCCAATTAATAGTAG
CGATATGGATTATCGTAGTGGCAATGGTTATCAAA
>g8567.t6 Gene=g8567 Length=135
MAPERIDPKKPEYDIRADVWSLGITLVELATGAYPYKDCKTDFEVLTKVLDSEPPSLPDD
QGFSEDFKDFVKRCLTKDYKQRPKYNQLLEHPFLNNPDPQKLVNVSAWFHAVTKEAGIVL
PTQDSPNLTASHLNR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8567.t6 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 116 | 0.000 |
| 2 | g8567.t6 | PANTHER | PTHR47238:SF2 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE HEMIPTEROUS | 1 | 117 | 0.000 |
| 3 | g8567.t6 | PANTHER | PTHR47238 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5 | 1 | 117 | 0.000 |
| 1 | g8567.t6 | Pfam | PF00069 | Protein kinase domain | 1 | 94 | 0.000 |
| 6 | g8567.t6 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 94 | 18.945 |
| 4 | g8567.t6 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 119 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
