Gene loci information

Transcript annotation

  • This transcript has been annotated as Dual specificity mitogen-activated protein kinase kinase hemipterous.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8567 g8567.t7 isoform g8567.t7 31367577 31369927
chr_2 g8567 g8567.t7 exon g8567.t7.exon1 31367577 31367932
chr_2 g8567 g8567.t7 cds g8567.t7.CDS1 31367578 31367932
chr_2 g8567 g8567.t7 exon g8567.t7.exon2 31368501 31368852
chr_2 g8567 g8567.t7 cds g8567.t7.CDS2 31368501 31368852
chr_2 g8567 g8567.t7 exon g8567.t7.exon3 31368920 31369145
chr_2 g8567 g8567.t7 cds g8567.t7.CDS3 31368920 31369145
chr_2 g8567 g8567.t7 exon g8567.t7.exon4 31369207 31369700
chr_2 g8567 g8567.t7 cds g8567.t7.CDS4 31369207 31369700
chr_2 g8567 g8567.t7 exon g8567.t7.exon5 31369849 31369927
chr_2 g8567 g8567.t7 cds g8567.t7.CDS5 31369849 31369849
chr_2 g8567 g8567.t7 TSS g8567.t7 31369942 31369942
chr_2 g8567 g8567.t7 TTS g8567.t7 NA NA

Sequences

>g8567.t7 Gene=g8567 Length=1507
ATGAAAAAAAAATTTGTAAAAAGTAATTTATAAATGAATTATTGAAGAGAATATTAGTAA
AAGTGAAATTTAGCGATAATGTCAAATTTGAATATAAATTTGACACCAGTCAATAAAAAA
CGACCTATACCTCAGCTTCCAATTCCGACCCTCTCACAGAGACCTAGAAATCAGGATAAT
GAGAAAAAATTGCGAGCCTTGAGGACTAATACACTAAAAATAAATGGAATAAATTATGAA
ACAAATATCCAAGACTTGGAATATCTTAGCGAATTAGGAAATGGCACGTCTGGTCATGTG
GTCAAAATGAAACACAAGCCTAGTGGTGCTGTGATTGCAGTGAAACAGATGCGTAGGACA
GGCAATGATGAAGAAACAAAAAGAATAACGATGGACTTGGATGTTGTGCTTAAATCACAC
GACTGTCCTTTCATCGTGCAATGTTTAGGATGTTTTATAACTGAAGCAGATGTGTGGATT
TGTATGGAACTTATGTCCACATGCTTCGATAAACTACAAAAACGAACCCAAAAACCAATT
CCCGAGTATATTCTAAAATGTGTAACTGAAGCTACTGTGAATGCATTAAATTATCTGAAA
ATTAAACATGGAGTTATTCATAGAGATGTCAAACCTAGTAATATTCTAATAGATGAACAT
GGAATAATTAAACTATGTGACTTTGGAATAAGTGGTCGTTTAGTTGACTCAAAAGCAAAA
ACACGCTCAGCTGGCTGCGCAGCATATATGGCTCCCGAAAGAATCGATCCAAAAAAACCT
GAGTACGATATTCGTGCAGATGTTTGGTCATTAGGGATAACATTAGTTGAATTGGCTACA
GGAGCGTACCCTTATAAAGACTGCAAAACTGACTTCGAAGTGCTCACTAAAGTATTAGAT
TCCGAACCGCCTTCACTGCCTGATGATCAAGGTTTTAGTGAAGATTTTAAGGACTTTGTA
AAGCGATGCCTAACGAAGGACTATAAACAACGACCTAAATATAATCAACTGCTAGAACAT
CCTTTCCTTAATAATCCTGATCCCCAAAAATTAGTTAATGTATCCGCATGGTTTCATGCT
GTAACTAAAGAAGCTGGAATTGTCTTACCAACACAAGATTCGCCAAATCTAACTGCCTCG
CATTTAAATAGAATTTCCTCACTTCAATCAGTCTCAGTCTCATCAACGCAAATACAGCAG
CATCAACAGCCTTTAGTTATGGCAAAAGAAAGTAGTAGTGTAACAGATGGTAATAACTTT
TCATCTATGAATATGAATCCTTTTTCTCCTCCTTCTTCTACGACTTCATTCACTTCGCCT
CAATTTCAAATGAATAACACAATTGAACGTGAGATGTCAACGACAAATAGAAATATCGAA
AATATCTTTCCATGTACGTCAAACTATCAACAACAACAGCAGCAGCAAGCGGCATCGATT
TATGGCAAAATAAATGATCCAATTAATAGTAGCGATATGGATTATCGTAGTGGCAATGGT
TATCAAA

>g8567.t7 Gene=g8567 Length=476
MSNLNINLTPVNKKRPIPQLPIPTLSQRPRNQDNEKKLRALRTNTLKINGINYETNIQDL
EYLSELGNGTSGHVVKMKHKPSGAVIAVKQMRRTGNDEETKRITMDLDVVLKSHDCPFIV
QCLGCFITEADVWICMELMSTCFDKLQKRTQKPIPEYILKCVTEATVNALNYLKIKHGVI
HRDVKPSNILIDEHGIIKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPKKPEYDIRA
DVWSLGITLVELATGAYPYKDCKTDFEVLTKVLDSEPPSLPDDQGFSEDFKDFVKRCLTK
DYKQRPKYNQLLEHPFLNNPDPQKLVNVSAWFHAVTKEAGIVLPTQDSPNLTASHLNRIS
SLQSVSVSSTQIQQHQQPLVMAKESSSVTDGNNFSSMNMNPFSPPSSTTSFTSPQFQMNN
TIEREMSTTNRNIENIFPCTSNYQQQQQQQAASIYGKINDPINSSDMDYRSGNGYQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g8567.t7 CDD cd06618 PKc_MKK7 45 338 0.0
5 g8567.t7 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 42 139 2.6E-38
6 g8567.t7 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 140 339 1.7E-60
11 g8567.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 34 -
2 g8567.t7 PANTHER PTHR47238:SF2 DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE HEMIPTEROUS 16 445 1.6E-189
3 g8567.t7 PANTHER PTHR47238 MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5 16 445 1.6E-189
1 g8567.t7 Pfam PF00069 Protein kinase domain 62 317 1.1E-59
9 g8567.t7 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 66 89 -
8 g8567.t7 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 179 191 -
12 g8567.t7 ProSiteProfiles PS50011 Protein kinase domain profile. 60 317 42.449
10 g8567.t7 SMART SM00220 serkin_6 60 317 7.2E-76
4 g8567.t7 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 58 407 2.29E-72

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values