Gene loci information

Transcript annotation

  • This transcript has been annotated as Dual specificity mitogen-activated protein kinase kinase hemipterous.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8567 g8567.t8 TTS g8567.t8 31368607 31368607
chr_2 g8567 g8567.t8 isoform g8567.t8 31368920 31369927
chr_2 g8567 g8567.t8 exon g8567.t8.exon1 31368920 31369145
chr_2 g8567 g8567.t8 cds g8567.t8.CDS1 31368921 31369145
chr_2 g8567 g8567.t8 exon g8567.t8.exon2 31369207 31369700
chr_2 g8567 g8567.t8 cds g8567.t8.CDS2 31369207 31369700
chr_2 g8567 g8567.t8 exon g8567.t8.exon3 31369866 31369927
chr_2 g8567 g8567.t8 cds g8567.t8.CDS3 31369866 31369866
chr_2 g8567 g8567.t8 TSS g8567.t8 31369942 31369942

Sequences

>g8567.t8 Gene=g8567 Length=782
ATGAAAAAAAAATTTGTAAAAAGTAATTTATAAATGAATTATTGAAGAGAATATTAGTAA
AATGTCAAATTTGAATATAAATTTGACACCAGTCAATAAAAAACGACCTATACCTCAGCT
TCCAATTCCGACCCTCTCACAGAGACCTAGAAATCAGGATAATGAGAAAAAATTGCGAGC
CTTGAGGACTAATACACTAAAAATAAATGGAATAAATTATGAAACAAATATCCAAGACTT
GGAATATCTTAGCGAATTAGGAAATGGCACGTCTGGTCATGTGGTCAAAATGAAACACAA
GCCTAGTGGTGCTGTGATTGCAGTGAAACAGATGCGTAGGACAGGCAATGATGAAGAAAC
AAAAAGAATAACGATGGACTTGGATGTTGTGCTTAAATCACACGACTGTCCTTTCATCGT
GCAATGTTTAGGATGTTTTATAACTGAAGCAGATGTGTGGATTTGTATGGAACTTATGTC
CACATGCTTCGATAAACTACAAAAACGAACCCAAAAACCAATTCCCGAGTATATTCTAAA
ATGTGTAACTGAAGCTACTGTGAATGCATTAAATTATCTGAAAATTAAACATGGAGTTAT
TCATAGAGATGTCAAACCTAGTAATATTCTAATAGATGAACATGGAATAATTAAACTATG
TGACTTTGGAATAAGTGGTCGTTTAGTTGACTCAAAAGCAAAAACACGCTCAGCTGGCTG
CGCAGCATATATGGCTCCCGAAAGAATCGATCCAAAAAAACCTGAGTACGATATTCGTGC
AG

>g8567.t8 Gene=g8567 Length=240
MSNLNINLTPVNKKRPIPQLPIPTLSQRPRNQDNEKKLRALRTNTLKINGINYETNIQDL
EYLSELGNGTSGHVVKMKHKPSGAVIAVKQMRRTGNDEETKRITMDLDVVLKSHDCPFIV
QCLGCFITEADVWICMELMSTCFDKLQKRTQKPIPEYILKCVTEATVNALNYLKIKHGVI
HRDVKPSNILIDEHGIIKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPKKPEYDIRA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g8567.t8 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 42 139 6.9E-39
6 g8567.t8 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 140 240 3.0E-27
10 g8567.t8 MobiDBLite mobidb-lite consensus disorder prediction 1 34 -
2 g8567.t8 PANTHER PTHR47238:SF2 DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE HEMIPTEROUS 16 240 2.0E-131
3 g8567.t8 PANTHER PTHR47238 MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5 16 240 2.0E-131
1 g8567.t8 Pfam PF00069 Protein kinase domain 62 233 7.1E-40
8 g8567.t8 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 66 89 -
7 g8567.t8 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 179 191 -
11 g8567.t8 ProSiteProfiles PS50011 Protein kinase domain profile. 60 240 28.669
9 g8567.t8 SMART SM00220 serkin_6 60 240 1.6E-14
4 g8567.t8 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 46 231 5.13E-45

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed