Gene loci information

Transcript annotation

  • This transcript has been annotated as Adenylate cyclase type 10.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8571 g8571.t1 isoform g8571.t1 31381951 31387166
chr_2 g8571 g8571.t1 exon g8571.t1.exon1 31381951 31382740
chr_2 g8571 g8571.t1 cds g8571.t1.CDS1 31381951 31382740
chr_2 g8571 g8571.t1 exon g8571.t1.exon2 31382807 31383202
chr_2 g8571 g8571.t1 cds g8571.t1.CDS2 31382807 31383202
chr_2 g8571 g8571.t1 exon g8571.t1.exon3 31383266 31383432
chr_2 g8571 g8571.t1 cds g8571.t1.CDS3 31383266 31383432
chr_2 g8571 g8571.t1 exon g8571.t1.exon4 31383490 31385803
chr_2 g8571 g8571.t1 cds g8571.t1.CDS4 31383490 31385803
chr_2 g8571 g8571.t1 exon g8571.t1.exon5 31385864 31386083
chr_2 g8571 g8571.t1 cds g8571.t1.CDS5 31385864 31386083
chr_2 g8571 g8571.t1 exon g8571.t1.exon6 31386150 31387097
chr_2 g8571 g8571.t1 cds g8571.t1.CDS6 31386150 31387097
chr_2 g8571 g8571.t1 exon g8571.t1.exon7 31387154 31387166
chr_2 g8571 g8571.t1 cds g8571.t1.CDS7 31387154 31387166
chr_2 g8571 g8571.t1 TSS g8571.t1 NA NA
chr_2 g8571 g8571.t1 TTS g8571.t1 NA NA

Sequences

>g8571.t1 Gene=g8571 Length=4848
ATGTTTGAATTAACAAGTCATCGTTCAAGTTTCAATATTGAAAATTTGAGGTATACATCG
CAAGCACATCGATTGACAACGCTTCAAGAATTTTTTAAACAACGTCAAAAATTGTTATAT
CGAAATAGATCATTTATAGCAAAACCTCAATCAAATCGAACATCAGCAGTTGATCCTAAT
GACACAAAAGCATTTTACCAAATTGCCTCACTCGTTCCAGATGAAGTTGTATACAATTCT
GAAAATACTAAAATAAGAAGTTTCGATGCTGCTGTTCTACTTGCAGATATTTCAGGCTTT
ACTGCTTTAAGTGATAAATATCAAAATGTTGAAAATGGTGCATCAAAATTAAGCATGGTT
CTAAATTTCTATCTTGGTATTATGGTTCAAGAAATTTTGTCACATAATGGTGACATCATA
AAATATGCAGGTGATGCATTTTTGGCAACCTTTCGTCATGATAAAAATATGTCAATGCAA
AATAGTGTTCAAAATGCAATCGATACTGCAATAATTATCCAAAGCAATTGTCAAGATTAT
GTCAGTGAAATTGGAGTTGTACTTAATGTAAAAATTGCAATTTCATGTGGTCAAGTTGAT
TTTTCGATTATTGGTGATGACATTTTTTCGCATTATATTGTGGTAGGCGATCCAATTTGG
CAAGTCAAGGCTTTGCAAAATTTGATTTCACCCAGTGAAGTTTTGATCACATGGAAATGC
TTTCAATACACACAAGATTCAAGATATGAATATGAAGCCAATCGAAAACATCGTCATTAC
AAAATTATTGGTTTTAAAGAGCAAATTAAATTAATTCGACAACAATATGAAGCTACTCTA
AATTTTCAAGAAATGCAAAGAAATCTTCATAAAAATATGGAAACAAATTCAACTTCAAAT
GTTTTAGTTGAAAATTCACCTGATGCAAATTTCTTAACCAGTCAAAATGAACAATTTGCT
TTAAGATCGATCAATGAACATTTGCTTTCAAATGAAACTAAAAAAAGTTTACGAAGATTT
GTTATTAAACCATTACTTAATGCAATAGACATGAATGAGAATATTGATTCATTAACTGAA
ATGAGAAATTGTGTGGTTGTCTTTGCGAATGTTATTCCAGCAAAAACTGATTCAAAAAAT
CTTATTGCAATCACTGATAAAATGTATAAAAAGTTATCGAGCATTGTACATGAATATGAA
GGAATTTTGAACAAGGTTTCTCTCTTTGACAAGGATATGATGTTTTTAAGTATTTTTGGT
TTGCGCGGATTTCAACATGAAAATGACTCTGAAATCGGTCTCAGATGTGCACATGAAATG
TATGAGACAATAAAAGGTTGGAGTGAAGTTTTAAAAATTTCAATTGGCGTGACAACTGGA
AAAACTTATTGCGGTGTCGTGGGACATTCGTTGAGAAGAGAATTTTCTGTAATCAGTGTC
ACAGTCAACAAAGCGGCTCGTCTGATGATGACCTACACCAACATTGTGAGTTGCGATCAA
GAGACACTCATTCAAAGTCGAATGAACTTGAAGCACTTTGCACAACTGCCAAGGAGAAAT
TTAAAAGGCATACGTGGAAACAAGCCAAATTATGAGTTTCGAGATATTTTAGATTTTGAC
AAATTGAGTTTGTCAGTAAAAGAGAATCATCAAATATATGAAAGACAAGAGTTATTTCAA
CTTGTGAACTCTGCCATTACTGAATCAATAGAAAATTTCAATTGTCCAAAAAGGTCTAAA
AAAATTTGTCATAAGTCATGTTTCATCATTAAATCCGATAGTCAAGAGGGAAAGAGTATA
ATCATTAATAAATTATCACGCGATTACCATGAGATTGATTTGAAATGTATACGATTGATA
CTCAACACGAAGCACTCGACAATGCATTTCTGGATAATTAAATATTTAATTATGAAAATT
TTTGTCAGTGAAAATTACGAGGAAATTGTGAGAAAAAAATTAGCAAAATTTAAAATTGAT
GAATATTTTTTCCTATTAAATGAAATTTTGAATACGAATTTTGAGCAGATGCATAAATTA
AAAATGACAGACGAGAATGTACAAACCATGCAGCAACTTTTAGTAAAAATTCTTTTCAAA
CAATCCCCACATTTTTGGGTTGTTCTTATTGATGATGCGGATTTTATTGATTCAATGTCA
ATGAATTTTTTAAATTCAATTATGGAATCGCAAACAATTTACTTTATTCTTACGATTGGC
AAGCAGCAGAAAAAATGGACTTTACAACAAAAGCTTTTTTATCGTGGAGGAGACGTCACG
CTATATTGTCTCAAGCCTATCGACAAAACATTCCATAAAGATATCGCATGTCAAAGCATA
AATGTTTCAGCAATTCCAATAGAATTCGAACGATTTTTGCAGCAGAAAAGTAATGGAAAT
CCAGGTTGGATTGAATCATGTGCCAAAACTTTGCTCTATTCAGGAAAATTGAAAATTAAA
AGTTTAACAATTATGAAGGCTTTGATTGATGGAATGATATTAAAGAATGATTTAATAATT
CATGATGAAAAACAAAGCAATAGCAGATTTTTCAATATTTTTCATAATGCTGTCGATATA
GCACGCATAACAGCTGCAAATCAAAGTGACGAAATGATCGATGTTGCAATAATTCAAAAT
GAACTAACTGAAAAAGATTATGTAGTAAATTATCCAAGCAATAAATTAATGCTTTATGAC
TCATTATCATCGCATGAACAAAATGTATGTAAGTGTGCATCTGTCTTAGGAGCGGAATTT
GATCGCGCAATATTGAATTATTTACTACCAAATAGCAATTTACGAGTCATTGGAAAGACA
ATCACAAAATTATTTCAACTAAAAATTCTCTATTGTGCATCAACTAAGGAAAAACATGAT
GATACCATGTGGGCCATAAAAAACGAAGTAATTTCATGCAATTGTAACAATTTCGAAATT
ATCGAATCTTGTCGTGATCTACCAAAGTACGCAAGTTGTGCACATCTAACCTTTCATGAC
GAAAAATTCCGTAAATATATTTATGACACATTAACTGAGAAGCAACTAAAGGAATATCAT
AAAAAATGCATAATCTTCTTATATCGCAACAATAAAAATTGTTCCAACTGTGGCAGTAAA
AGCTTAGAAATTATTGACGAAATCAAGTTGAATTATCATGATGGTTTTATGAAATTGAGC
TCGAATCATGACAAAGTGAAAAAAAGAATGTTAAAGGAACTGAAAGTTAAAGTTTATGAC
TTTGATAGGCTCGATTGTCAAAAAAGATTGAAAATATTTCCTTTCGTGCTGAATTATCTC
AATTATGATTTTCGTTTATGCAAATGTGATAAAATTGTAACTGGACTTTTGACTCAAATT
AGTGATCATTGTCAAGGAAAGGATATGGTTGTCAAGAAAATTTACTCAGACATAACGCTA
GCAGAATTGTGTTTGAAAAGTGTAAATTATCCACGTGCCATCAACTTACTTGAATCTGCA
GCTAACAAATTAAATACTTCAATCGATGCATTTGAAGAGAAAATTTTGTTTTTCACATAT
TTACAAGGAAGAATTTTGCTTTTACATGGAATATGTGCAGAAAAATTAGAAGAAAAAAAG
GAAGCTTTATCTCACTATTATGATGCATGCAGAATTTATAAAATTTCATTTCCATCAAAA
TTCAATTTTAAAGCAAAGCTAAAATTATGGAAATTAATTCATGATTTAAAAAGCAAAAAA
ACTTATTGTCAAACTTTGCCAATCACAAGAATTCAGACAATGATAAAACAACAAGGTTCA
ATTGTTCTTCAGAAAATCTGTGAGTTTTATACTCGAGAACACAATGAAAAGATGGCAAAA
CTAGCAGCAATGTGGTCTTTGAAAGAAGCTTTAGAATGCAGAAATTATACGGAAACAATT
GCAAGATGCTTCAGAAATCTTCTTCAAGTTAGCACTTACACTTTTAGTATTGACTCTATT
GTTTTCAATCAAGTATTCAAAGGACTTTGCTATCGAAATCTGAACAAAGAATCACTTGAA
GAAATATGCAATCTTTATATCACTCTTATGGAATATCAAATTCGACGTGGAGAAATAAAA
GTTGCAATAAAAATTGGTCAATATGCAAAGAAAATTTCGTTTCAAATGTCATCTAAAAAA
TTTCTAGTCAATCTCACGCCAGTCCTATTTTATGCATTATTAAACTCACGACAATTCCAA
GAGTGCTGCAAGTTGCTGCAAGAATTCAGTTACTCTACAAAACGAACTAATAACGTGCAC
GCGTCCTCATGGTACTATGCACTTTGTATGGATTTAATTTTAGACGCTGGCAATGACAGT
GTTGTTGAATACGATGCGTGTTGGAAACATAATTTAGAGAAATTATCCTTCACGAATTAT
GACAGCTATTCGGAAGCATACGCTCGATTTCTCACCAATCTTTGGCTTTGGAATTTGCGA
AAAGAAAATATCGATATGTATCGATTATTGATGTCGAATGTTTTAACATATTATAACGAA
GAAATTAGCTTATGCAATATTTTTACTGGAATTCGTATTATCGATGGACTTAATCTACAA
ACATTGAATTCAATGCGTGTAAATAATTGGGTAGAATTTCAAAATCTTATCGAAAAGACA
AAAATGTTTTTGGAGAAAATGAAGAAAATTGGCAAATGTTATTCATGCTTTGATGAGCGT
CTTGAACTATGTGAAATTCATTTTAATATGATAAAAAGACTAAGATTAGATTTTTGCCGC
CGAAATCAACTAATGCGTCTATTCAAGCGAGCCCTCAAAAGAAATGACATGAACACTGTT
CATCATGCAGGAAGATTAATTTTGCACAGTTATAAAAATCATATATGA

>g8571.t1 Gene=g8571 Length=1615
MFELTSHRSSFNIENLRYTSQAHRLTTLQEFFKQRQKLLYRNRSFIAKPQSNRTSAVDPN
DTKAFYQIASLVPDEVVYNSENTKIRSFDAAVLLADISGFTALSDKYQNVENGASKLSMV
LNFYLGIMVQEILSHNGDIIKYAGDAFLATFRHDKNMSMQNSVQNAIDTAIIIQSNCQDY
VSEIGVVLNVKIAISCGQVDFSIIGDDIFSHYIVVGDPIWQVKALQNLISPSEVLITWKC
FQYTQDSRYEYEANRKHRHYKIIGFKEQIKLIRQQYEATLNFQEMQRNLHKNMETNSTSN
VLVENSPDANFLTSQNEQFALRSINEHLLSNETKKSLRRFVIKPLLNAIDMNENIDSLTE
MRNCVVVFANVIPAKTDSKNLIAITDKMYKKLSSIVHEYEGILNKVSLFDKDMMFLSIFG
LRGFQHENDSEIGLRCAHEMYETIKGWSEVLKISIGVTTGKTYCGVVGHSLRREFSVISV
TVNKAARLMMTYTNIVSCDQETLIQSRMNLKHFAQLPRRNLKGIRGNKPNYEFRDILDFD
KLSLSVKENHQIYERQELFQLVNSAITESIENFNCPKRSKKICHKSCFIIKSDSQEGKSI
IINKLSRDYHEIDLKCIRLILNTKHSTMHFWIIKYLIMKIFVSENYEEIVRKKLAKFKID
EYFFLLNEILNTNFEQMHKLKMTDENVQTMQQLLVKILFKQSPHFWVVLIDDADFIDSMS
MNFLNSIMESQTIYFILTIGKQQKKWTLQQKLFYRGGDVTLYCLKPIDKTFHKDIACQSI
NVSAIPIEFERFLQQKSNGNPGWIESCAKTLLYSGKLKIKSLTIMKALIDGMILKNDLII
HDEKQSNSRFFNIFHNAVDIARITAANQSDEMIDVAIIQNELTEKDYVVNYPSNKLMLYD
SLSSHEQNVCKCASVLGAEFDRAILNYLLPNSNLRVIGKTITKLFQLKILYCASTKEKHD
DTMWAIKNEVISCNCNNFEIIESCRDLPKYASCAHLTFHDEKFRKYIYDTLTEKQLKEYH
KKCIIFLYRNNKNCSNCGSKSLEIIDEIKLNYHDGFMKLSSNHDKVKKRMLKELKVKVYD
FDRLDCQKRLKIFPFVLNYLNYDFRLCKCDKIVTGLLTQISDHCQGKDMVVKKIYSDITL
AELCLKSVNYPRAINLLESAANKLNTSIDAFEEKILFFTYLQGRILLLHGICAEKLEEKK
EALSHYYDACRIYKISFPSKFNFKAKLKLWKLIHDLKSKKTYCQTLPITRIQTMIKQQGS
IVLQKICEFYTREHNEKMAKLAAMWSLKEALECRNYTETIARCFRNLLQVSTYTFSIDSI
VFNQVFKGLCYRNLNKESLEEICNLYITLMEYQIRRGEIKVAIKIGQYAKKISFQMSSKK
FLVNLTPVLFYALLNSRQFQECCKLLQEFSYSTKRTNNVHASSWYYALCMDLILDAGNDS
VVEYDACWKHNLEKLSFTNYDSYSEAYARFLTNLWLWNLRKENIDMYRLLMSNVLTYYNE
EISLCNIFTGIRIIDGLNLQTLNSMRVNNWVEFQNLIEKTKMFLEKMKKIGKCYSCFDER
LELCEIHFNMIKRLRLDFCRRNQLMRLFKRALKRNDMNTVHHAGRLILHSYKNHI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g8571.t1 CDD cd07302 CHD 89 271 1.70691E-22
14 g8571.t1 CDD cd07302 CHD 363 532 1.8012E-16
10 g8571.t1 Coils Coil Coil 1154 1174 -
8 g8571.t1 Gene3D G3DSA:3.30.70.1230 Adenylyl Cyclase 84 302 7.6E-37
9 g8571.t1 Gene3D G3DSA:3.30.70.1230 Adenylyl Cyclase 358 537 1.9E-28
3 g8571.t1 PANTHER PTHR16305:SF28 ADENYLATE CYCLASE TYPE 10 67 1443 2.7E-136
4 g8571.t1 PANTHER PTHR16305 TESTICULAR SOLUBLE ADENYLYL CYCLASE 67 1443 2.7E-136
1 g8571.t1 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 90 253 8.4E-10
2 g8571.t1 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 375 489 4.1E-6
11 g8571.t1 ProSiteProfiles PS50125 Guanylate cyclase domain profile. 91 226 14.416
12 g8571.t1 ProSiteProfiles PS50125 Guanylate cyclase domain profile. 359 489 11.463
6 g8571.t1 SUPERFAMILY SSF55073 Nucleotide cyclase 88 253 3.3E-27
7 g8571.t1 SUPERFAMILY SSF55073 Nucleotide cyclase 362 532 1.05E-14
5 g8571.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 552 821 6.54E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009190 cyclic nucleotide biosynthetic process BP
GO:0035556 intracellular signal transduction BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values