General information for g8575.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Coiled-coil domain-containing protein 6.
Parent gene
- The parent gene g8575 is located on chr_2: 31404335..31404878 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8575 | g8575.t1 | TTS | g8575.t1 | 31402245 | 31402245 |
| chr_2 | g8575 | g8575.t1 | isoform | g8575.t1 | 31402873 | 31404335 |
| chr_2 | g8575 | g8575.t1 | exon | g8575.t1.exon1 | 31402873 | 31403154 |
| chr_2 | g8575 | g8575.t1 | cds | g8575.t1.CDS1 | 31402873 | 31403154 |
| chr_2 | g8575 | g8575.t1 | exon | g8575.t1.exon2 | 31403206 | 31403551 |
| chr_2 | g8575 | g8575.t1 | cds | g8575.t1.CDS2 | 31403206 | 31403551 |
| chr_2 | g8575 | g8575.t1 | exon | g8575.t1.exon3 | 31403620 | 31404335 |
| chr_2 | g8575 | g8575.t1 | cds | g8575.t1.CDS3 | 31403620 | 31404335 |
| chr_2 | g8575 | g8575.t1 | TSS | g8575.t1 | 31404874 | 31404874 |
Sequences
>g8575.t1 Gene=g8575 Length=1344
ATGGACAGCTCGATATCGTGTGAATCGGAATCATTGGATGGATTTAGTTCCATGGCACCT
CCCTCGCCTGTTTCTCGTGAACAATTACAAAAGCGAATAGATAGTCTTAATCAACAGAAT
AAAGTGTTAAAGGTAGAATTGGATACGTATAAAATTCGTGTTAAACAATTACAAGAAGAA
AATAAATCGCTTCGGCAAGCATCTGTGAATATTCAAGCAAAAGCAGAACAGGAAGAAGAA
TATATTTCTAATACATTGTTGAAAAAAATTCAAGCACTAAAAAAAGAGAAGGAAACACTA
GCACATCATTATGAACGCGAAGAAGAATGTTTGACTAATGATTTATCGCGTAAATTAGAT
CAGTTACGTCAAGAGAAATGTAAGCTCGAATTAACATTAGAACAGGAGCAGGAATGCTTA
GTTAATAAGCTAATGCGTAAGATTGAGAAGCTTGAAGCTGAAACAATAGCAAAGCAAACG
AATCTTGAACAATTAAGGCGTGAAATGGTCGAGTTGGAAAATACACTCGAGCAAGAGCAA
GAGGCGCTAGTCAATAAATTATGGAAACGCATGGATAAATTGGAGGCTGAAAAAAGATCG
CTTCAAATTCGTTTAGATCAACCAACAGAGTCAACACATATAATTCAACAACAAATTCAA
AATAATCCAAATAGTGATGAAGTTAGTGTTCTTACTTCTCATATTCAAACATTACGATCT
GAGGTTGAATTATTAAGAAACAATTTGGCTGCAGCAGAAAAAGAAAAATTGGAAAAAACT
CAACATTTTCAACTGGAAGAAAGACATATTAGAGAAGAAAATGTTCGTTTACAGCGCAAA
TTACAACTCGAAGTGGAACGTCGTGAAGAATTATGTCGTCATTTGTCTGAATCTGAAAGT
TCTTTAGAAATGGAAGAAGAGAGAATATTTAATGAGAATGTTGGAAATGCACGAACTAGA
ACAGTTAGCTCTCCTGTTCCGACACACAGTCCATCATCATCGTCTCGTCCATTGTCACCG
ACACGCTGTTATTATTGTGCACGCTGTGGTATTCAACTTTTGGGACGCCGTGAACGTTTT
GTTAAGCCGGCAATTCCATTACCAAGTCTTGGTTTAAATACCTCTGCACCGAATGTACTT
TCGTCATCTTCTGTAATTCCAAGTCAACTTCATTCATCTTCGTCTCAAGTTATAAATAAT
AATGTTAACTCTGGAAGCAATGCAAGTTTATCATCCTTAAACAATTCTATTAGCTCAACA
ACAAGTACGTCAACTTTACCATCACAAAGTAGCAGCAACATTTCAGCTTTTGTGCAACCT
CCAAGTCCAATGAATTTGGAATAA
>g8575.t1 Gene=g8575 Length=447
MDSSISCESESLDGFSSMAPPSPVSREQLQKRIDSLNQQNKVLKVELDTYKIRVKQLQEE
NKSLRQASVNIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLD
QLRQEKCKLELTLEQEQECLVNKLMRKIEKLEAETIAKQTNLEQLRREMVELENTLEQEQ
EALVNKLWKRMDKLEAEKRSLQIRLDQPTESTHIIQQQIQNNPNSDEVSVLTSHIQTLRS
EVELLRNNLAAAEKEKLEKTQHFQLEERHIREENVRLQRKLQLEVERREELCRHLSESES
SLEMEEERIFNENVGNARTRTVSSPVPTHSPSSSSRPLSPTRCYYCARCGIQLLGRRERF
VKPAIPLPSLGLNTSAPNVLSSSSVIPSQLHSSSSQVINNNVNSGSNASLSSLNNSISST
TSTSTLPSQSSSNISAFVQPPSPMNLE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g8575.t1 | Coils | Coil | Coil | 26 | 77 | - |
| 8 | g8575.t1 | Coils | Coil | Coil | 87 | 125 | - |
| 9 | g8575.t1 | Coils | Coil | Coil | 134 | 204 | - |
| 10 | g8575.t1 | Coils | Coil | Coil | 235 | 262 | - |
| 7 | g8575.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - |
| 4 | g8575.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 337 | - |
| 5 | g8575.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 337 | - |
| 3 | g8575.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 442 | - |
| 6 | g8575.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 447 | - |
| 2 | g8575.t1 | PANTHER | PTHR15276 | H4 D10S170 PROTEIN-RELATED | 1 | 342 | 2.2E-127 |
| 1 | g8575.t1 | Pfam | PF09755 | Uncharacterized conserved protein H4 (DUF2046) | 7 | 310 | 7.8E-140 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K09288 (coiled-coil domain-containing protein 6)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
