General information for g8580.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8580 is located on chr_2: 31468993..31469527 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8580 | g8580.t1 | TSS | g8580.t1 | 31468293 | 31468293 |
| chr_2 | g8580 | g8580.t1 | isoform | g8580.t1 | 31468993 | 31469527 |
| chr_2 | g8580 | g8580.t1 | exon | g8580.t1.exon1 | 31468993 | 31469160 |
| chr_2 | g8580 | g8580.t1 | cds | g8580.t1.CDS1 | 31468993 | 31469160 |
| chr_2 | g8580 | g8580.t1 | exon | g8580.t1.exon2 | 31469330 | 31469527 |
| chr_2 | g8580 | g8580.t1 | cds | g8580.t1.CDS2 | 31469330 | 31469527 |
| chr_2 | g8580 | g8580.t1 | TTS | g8580.t1 | NA | NA |
Sequences
>g8580.t1 Gene=g8580 Length=366
ATGGAAAATGATGATTTTAAAGATTTTACAATCAAAATTGGTTCAATGGAATTCAAAGCT
CATAAATTTGTTCTTGTTGCTCGTAGTCCAACTTTTGCAAACATTATCAAAGAAAACGTC
CATGCTGAATACTTGAATCTTCTTGATATTTCAGCTGATATTTTTCAATTGAGCATCAAA
TTCAAAAATGATCAATTAAGACAAAAATCATTTGAAAAAATCAAGAAAATTTTAGATTTC
ATAGAAATTGATGACAATTTGCCATTTGAACCAGGAAAACTTGAAGAACTGATTGAAATT
AAAAAAAAAGAACAAATGATGCGAAAAATTGAAGAAAATGTTAGAAATGATCTAATTCAA
CAGTAG
>g8580.t1 Gene=g8580 Length=121
MENDDFKDFTIKIGSMEFKAHKFVLVARSPTFANIIKENVHAEYLNLLDISADIFQLSIK
FKNDQLRQKSFEKIKKILDFIEIDDNLPFEPGKLEELIEIKKKEQMMRKIEENVRNDLIQ
Q
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8580.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 8 | 61 | 1.55208E-9 |
| 4 | g8580.t1 | Coils | Coil | Coil | 93 | 113 | - |
| 3 | g8580.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 111 | 6.5E-10 |
| 1 | g8580.t1 | Pfam | PF00651 | BTB/POZ domain | 2 | 99 | 8.1E-10 |
| 5 | g8580.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 7 | 61 | 11.957 |
| 2 | g8580.t1 | SUPERFAMILY | SSF54695 | POZ domain | 2 | 61 | 6.43E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed