General information for g8581.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin sulfotransferase.
Parent gene
- The parent gene g8581 is located on chr_2: 31499109..31500053 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8581 | g8581.t1 | TSS | g8581.t1 | 31498889 | 31498889 |
| chr_2 | g8581 | g8581.t1 | isoform | g8581.t1 | 31499109 | 31500053 |
| chr_2 | g8581 | g8581.t1 | exon | g8581.t1.exon1 | 31499109 | 31499224 |
| chr_2 | g8581 | g8581.t1 | cds | g8581.t1.CDS1 | 31499109 | 31499224 |
| chr_2 | g8581 | g8581.t1 | exon | g8581.t1.exon2 | 31499330 | 31499465 |
| chr_2 | g8581 | g8581.t1 | cds | g8581.t1.CDS2 | 31499330 | 31499465 |
| chr_2 | g8581 | g8581.t1 | exon | g8581.t1.exon3 | 31499523 | 31500053 |
| chr_2 | g8581 | g8581.t1 | cds | g8581.t1.CDS3 | 31499523 | 31500053 |
| chr_2 | g8581 | g8581.t1 | TTS | g8581.t1 | NA | NA |
Sequences
>g8581.t1 Gene=g8581 Length=783
ATGTCTTTTCCGAAATCAGGTACAACATGGACTCAAGAAATGGCTTGGTTGTTGAACAAT
AATTTAGATTTTGAAAAGTCTAAAGAAGATTTAGTTTCACGTTATCTCTTTCTTGAATTT
GAGGCAATACTTTATTCTAATCTTGACGCAACTTTTGATGAATATGTTGCAAATGCTCAA
AAACCACGATATATTAAATGCCATTTACCTGTTTTTATGCTTCCTGATGAATTATGGACA
ATTAAACCAAAAATAATTTACACAGTACGCAATCCAAAAGATGTTATAGTTTCATTTTAT
CATCATTATCGTCATTTGCAAGGCTATTCTGGCACACTTCATGATTTTATTAATGCTTTC
GTTAATGATAAAGTTAGTTATTCGCCAATGAATGAACATGTTTTGGAATATTGGAAATTA
TCGAAGAAATATGAAAATATTTTGTTCTTATTTTATGAAGATCGCATAAGAAATCTTGAA
CAGGAAGTTAAAAAAGTTGCGAAATTCCTAGAAAAAGAATATAGTCAAGAAGAAATTGAG
GAAGTTTGTGAACATTTGACATTTGATTCAATGCAAAAGAATTCATCATGTAATAATGAA
AATCTTACAAAAATGTTGAAAGAAAAACATGAATATGAAACAAAAGATGAAAAATTCAAT
TTTATTCGAGAAGGAAAAGTTGGAAGTTACAAGAAAGAAATGAATGAAGAAGAAATCAAA
AGAGTTGAAGAATATATGAACTTTCCTGATTTTAAGGAATTTGGATTTGAATATAAATTT
TAA
>g8581.t1 Gene=g8581 Length=260
MSFPKSGTTWTQEMAWLLNNNLDFEKSKEDLVSRYLFLEFEAILYSNLDATFDEYVANAQ
KPRYIKCHLPVFMLPDELWTIKPKIIYTVRNPKDVIVSFYHHYRHLQGYSGTLHDFINAF
VNDKVSYSPMNEHVLEYWKLSKKYENILFLFYEDRIRNLEQEVKKVAKFLEKEYSQEEIE
EVCEHLTFDSMQKNSSCNNENLTKMLKEKHEYETKDEKFNFIREGKVGSYKKEMNEEEIK
RVEEYMNFPDFKEFGFEYKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8581.t1 | Coils | Coil | Coil | 160 | 180 | - |
| 5 | g8581.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 257 | 7.6E-78 |
| 2 | g8581.t1 | PANTHER | PTHR11783 | SULFOTRANSFERASE SULT | 2 | 246 | 8.0E-81 |
| 3 | g8581.t1 | PANTHER | PTHR11783:SF180 | GH11818P-RELATED | 2 | 246 | 8.0E-81 |
| 1 | g8581.t1 | Pfam | PF00685 | Sulfotransferase domain | 1 | 247 | 7.9E-57 |
| 4 | g8581.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 247 | 2.92E-65 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008146 | sulfotransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed