Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Luciferin sulfotransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8582 g8582.t2 TSS g8582.t2 31500911 31500911
chr_2 g8582 g8582.t2 isoform g8582.t2 31500945 31502252
chr_2 g8582 g8582.t2 exon g8582.t2.exon1 31500945 31501246
chr_2 g8582 g8582.t2 cds g8582.t2.CDS1 31500945 31501246
chr_2 g8582 g8582.t2 exon g8582.t2.exon2 31501307 31501442
chr_2 g8582 g8582.t2 cds g8582.t2.CDS2 31501307 31501442
chr_2 g8582 g8582.t2 exon g8582.t2.exon3 31501500 31502087
chr_2 g8582 g8582.t2 cds g8582.t2.CDS3 31501500 31502030
chr_2 g8582 g8582.t2 exon g8582.t2.exon4 31502146 31502252
chr_2 g8582 g8582.t2 TTS g8582.t2 31502257 31502257

Sequences

>g8582.t2 Gene=g8582 Length=1133
ATGTTTAACTACAAAAATCTTGATGATGACGAATTTGCCAAAAAAGTCATTACTCCTACA
ACTTATAATTATGTAGACATAATTGATCCTAAAAATCCTAAAAATCATTGTGTTTTGATA
AAAAATTATCAAAAAATCGCAGAAAAGATAAAAAATTTCAAAATTTATAAAGACGATGTT
TGGATAATGTCTTTTCCAAAATCAGGTACAACATGGACTCAAGAAATGGCTTGGTTGTTG
AACAATAATTTAGATTTTGAAAAGTCTAAAGAAGATTTAGTTTCACGTTATATTTTTCTT
GAATTTGAGGGAATACTTTATTCTAATCTTGACGCAACTTTTGATAAATATGTTGCAAAT
GCTCAAAAACCACGATATATTAAATGCCATTTACCTGTTTTTATGCTTCCTGATGAATTA
TGGACAATTAAACCAAAAATAATTTACACAGTACGCAATCCAAAAGATGTTATAGTTTCA
TTTTATCATCATTATCGTCATTTGCAAGGCTATTCTGGCACACTTCATGATTTTATTAAT
GCTTTCGTTAATGATAAAGTTAGTTATTCGCCAATGAATGAACATGTTTTGGAATATTGG
AAATTATCGAAGAAATATGAAAATATTTTGTTCTTATTTTATGAAGATCGCATAAGAAAT
CTCGAACAGGAAGTTAAAAAAGTTGCAAAATTCCTAGAAAAAGAATATAGTCAAGAAGAA
ATTGAGAAAGTTTGTGAACATTTGACATTTGATTCAATGCAAAAAAATTCATCATGCAAT
AATGAAAATCTTACAAAAATGTTGAAAGAAAAACATGAATATGAAACAAAAGATGAAAAA
TTCAATTTTATTCGAGAAGGAAAAGTTGGAAGTTACAAGAAAGAAATGAATGAAGAAGAA
ATCAAAAGAGTTGAAGAATATATGAACTTTCCTGATTTTAAAGAACATGGATTTGAATAT
AAAAACTAAAAAATATTTTTGAAAATTTTTAAAATGTTTTCTAGTAAAATAGTTTAGATT
GTAATTGAAATTTGAAAATTTTAACGGTTTTGGATAATTTAATTTTTTTGTAAACAAATG
TTTTTTACAATTTCTTTCTTGTTACCAAATAAATACAAATCATAAAATAATAA

>g8582.t2 Gene=g8582 Length=322
MFNYKNLDDDEFAKKVITPTTYNYVDIIDPKNPKNHCVLIKNYQKIAEKIKNFKIYKDDV
WIMSFPKSGTTWTQEMAWLLNNNLDFEKSKEDLVSRYIFLEFEGILYSNLDATFDKYVAN
AQKPRYIKCHLPVFMLPDELWTIKPKIIYTVRNPKDVIVSFYHHYRHLQGYSGTLHDFIN
AFVNDKVSYSPMNEHVLEYWKLSKKYENILFLFYEDRIRNLEQEVKKVAKFLEKEYSQEE
IEKVCEHLTFDSMQKNSSCNNENLTKMLKEKHEYETKDEKFNFIREGKVGSYKKEMNEEE
IKRVEEYMNFPDFKEHGFEYKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g8582.t2 Coils Coil Coil 222 242 -
5 g8582.t2 Gene3D G3DSA:3.40.50.300 - 6 318 5.0E-89
2 g8582.t2 PANTHER PTHR11783 SULFOTRANSFERASE SULT 25 308 8.6E-93
3 g8582.t2 PANTHER PTHR11783:SF180 GH11818P-RELATED 25 308 8.6E-93
1 g8582.t2 Pfam PF00685 Sulfotransferase domain 57 309 2.1E-60
4 g8582.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 34 309 6.83E-74

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008146 sulfotransferase activity MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed