General information for g8582.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8582 is located on chr_2: 31501509..31502252 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8582 | g8582.t3 | TSS | g8582.t3 | 31500911 | 31500911 |
| chr_2 | g8582 | g8582.t3 | isoform | g8582.t3 | 31501509 | 31502252 |
| chr_2 | g8582 | g8582.t3 | exon | g8582.t3.exon1 | 31501509 | 31502252 |
| chr_2 | g8582 | g8582.t3 | cds | g8582.t3.CDS1 | 31501635 | 31502030 |
| chr_2 | g8582 | g8582.t3 | TTS | g8582.t3 | 31502257 | 31502257 |
Sequences
>g8582.t3 Gene=g8582 Length=744
ACAGTACGCAATCCAAAAGATGTTATAGTTTCATTTTATCATCATTATCGTCATTTGCAA
GGCTATTCTGGCACACTTCATGATTTTATTAATGCTTTCGTTAATGATAAAGTTAGTTAT
TCGCCAATGAATGAACATGTTTTGGAATATTGGAAATTATCGAAGAAATATGAAAATATT
TTGTTCTTATTTTATGAAGATCGCATAAGAAATCTCGAACAGGAAGTTAAAAAAGTTGCA
AAATTCCTAGAAAAAGAATATAGTCAAGAAGAAATTGAGAAAGTTTGTGAACATTTGACA
TTTGATTCAATGCAAAAAAATTCATCATGCAATAATGAAAATCTTACAAAAATGTTGAAA
GAAAAACATGAATATGAAACAAAAGATGAAAAATTCAATTTTATTCGAGAAGGAAAAGTT
GGAAGTTACAAGAAAGAAATGAATGAAGAAGAAATCAAAAGAGTTGAAGAATATATGAAC
TTTCCTGATTTTAAAGAACATGGATTTGAATATAAAAACTAAAAAATATTTTTGAAAATT
TTTAAAATGTTTTCTAGTAAAATAGTTTAGATTGTAATTTCAAAAACGTTGGTTTAGGGC
AAAATTAAAATTTTAAATGACATTTAACAGTTTTTAGGAAATTTGAAAATTTTAACGGTT
TTGGATAATTTAATTTTTTTGTAAACAAATGTTTTTTACAATTTCTTTCTTGTTACCAAA
TAAATACAAATCATAAAATAATAA
>g8582.t3 Gene=g8582 Length=131
MNEHVLEYWKLSKKYENILFLFYEDRIRNLEQEVKKVAKFLEKEYSQEEIEKVCEHLTFD
SMQKNSSCNNENLTKMLKEKHEYETKDEKFNFIREGKVGSYKKEMNEEEIKRVEEYMNFP
DFKEHGFEYKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8582.t3 | Coils | Coil | Coil | 31 | 51 | - |
| 5 | g8582.t3 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 129 | 1.4E-29 |
| 2 | g8582.t3 | PANTHER | PTHR11783 | SULFOTRANSFERASE SULT | 2 | 118 | 2.8E-24 |
| 3 | g8582.t3 | PANTHER | PTHR11783:SF180 | GH11818P-RELATED | 2 | 118 | 2.8E-24 |
| 1 | g8582.t3 | Pfam | PF00685 | Sulfotransferase domain | 3 | 118 | 1.9E-23 |
| 4 | g8582.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 3 | 118 | 3.15E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008146 | sulfotransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed