General information for g8602.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Band 3 anion transport protein.
Parent gene
- The parent gene g8602 is located on chr_2: 31710822..31711792 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8602 | g8602.t2 | isoform | g8602.t2 | 31699853 | 31701457 |
| chr_2 | g8602 | g8602.t2 | exon | g8602.t2.exon1 | 31699853 | 31700597 |
| chr_2 | g8602 | g8602.t2 | TTS | g8602.t2 | 31699857 | 31699857 |
| chr_2 | g8602 | g8602.t2 | cds | g8602.t2.CDS1 | 31700523 | 31700597 |
| chr_2 | g8602 | g8602.t2 | exon | g8602.t2.exon2 | 31700652 | 31700880 |
| chr_2 | g8602 | g8602.t2 | cds | g8602.t2.CDS2 | 31700652 | 31700880 |
| chr_2 | g8602 | g8602.t2 | exon | g8602.t2.exon3 | 31701069 | 31701263 |
| chr_2 | g8602 | g8602.t2 | cds | g8602.t2.CDS3 | 31701069 | 31701263 |
| chr_2 | g8602 | g8602.t2 | exon | g8602.t2.exon4 | 31701321 | 31701457 |
| chr_2 | g8602 | g8602.t2 | cds | g8602.t2.CDS4 | 31701321 | 31701328 |
| chr_2 | g8602 | g8602.t2 | TSS | g8602.t2 | NA | NA |
Sequences
>g8602.t2 Gene=g8602 Length=1306
AAAGGAAATGGACTTCATTGGGATATTGTTCTTTTATGCTTCTGTAATACAGTTTGTGGA
TTCTTTGGACTTCCATGGCATTGTGCTGCAACTGTTCGTTCTGTGACCCACATTTCAGCT
GTCACTATCATGTCAACAAATCATGCTCCAGGAGATTCACCAAAAATTGCTGATATTAAA
GAACAAAGATTGTCAGGATTCTTTGTGTCTCTTATGATTGGATTGTCAATTTTCGCAGCA
CCACTGCTCAAAAAGATTCCAATGTCAGTTCTTTTTGGTGTCTTCTTGTATATGGGAATT
TGTTCAATGATTGGTGTACAGTTCTTTGAAAGATTAAGACTATTCTTTATGCCGGTCAAA
CATCATACACAAGAACCATATGTACGACGACTTCCAACATGGAAAATGCATTTATTCACA
ACAGTTCAAGTGTTGGCTCTTGCACTTTTATGGGGTGTAAAATCTTCGAAATTTTCACTA
GCATTTCCATTTATTCTTATGTTGATGGTTCCAATTCGTCAGCAACTTGAGAAATTCTAC
ACACCGATTGAACTTAGAGCGATTGATGGAACTCAAACAACAAATGACACTGAAGATGAA
CCCGACTTTTATGAACAAGCTCCGCTCCCTGCGTAAAAAAATTTCATCTCGAACATATTT
AAAGTATACTTATTAAAAAAAATATGAAATCGATGGTGTCTATAGAAGAAATTTTTCTAG
AAAAGCAACTTTATTGCCTAAAAATGTAATTATATCAGTACAATAGTGAAGTTTTTGTAA
ATAGTAAAAAATGACGATAATTACAAAATGAGAATTCTAATTGTTTTTCTTTAATTATTT
TGACAATTGCAATTTAGAGAAATATAAATTGAGTTATAAGAAATGAAAAAATTTTATTCA
AAAATTTACTGAGATGACAAAAGTTTCAATTACATCGTCGCGGAAACTTCTGAGATGACT
AAAATAATTTAATTTCTTATAACTTGATTAAAAAATAGCAATATAATAGAAAAAGTTAAG
TAAGTAAAAAATCCTCGGCATAAAACTTAAAAAAGAAATTGATTGAAATTCCCCAATAAT
ATTTGTTAAATACTTAAGAACTTCTTGCATATCTAAGATCGAAAACTTTGCAATTAAAAT
TTAAATTGTTAGAGAAACTTTGAAGCTTTAAAAATGATAAAAAAGAGAACAAAATTGATA
GAGAAAAAATCGAAAATTTTATGAGAAAAAAAACTGTTATCAATTTTAAAATGATTCAAA
AAATTCTAATAAAATTCTATTTTATTTATTAATAATAATAAGGAAA
>g8602.t2 Gene=g8602 Length=168
MSTNHAPGDSPKIADIKEQRLSGFFVSLMIGLSIFAAPLLKKIPMSVLFGVFLYMGICSM
IGVQFFERLRLFFMPVKHHTQEPYVRRLPTWKMHLFTTVQVLALALLWGVKSSKFSLAFP
FILMLMVPIRQQLEKFYTPIELRAIDGTQTTNDTEDEPDFYEQAPLPA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8602.t2 | PANTHER | PTHR11453:SF47 | ANION EXCHANGE PROTEIN | 1 | 158 | 5.4E-63 |
| 3 | g8602.t2 | PANTHER | PTHR11453 | ANION EXCHANGE PROTEIN | 1 | 158 | 5.4E-63 |
| 1 | g8602.t2 | Pfam | PF00955 | HCO3- transporter family | 1 | 99 | 3.7E-42 |
| 7 | g8602.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 15 | g8602.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 40 | - |
| 11 | g8602.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 41 | 45 | - |
| 14 | g8602.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 46 | 67 | - |
| 9 | g8602.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 68 | 87 | - |
| 12 | g8602.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 109 | - |
| 10 | g8602.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 110 | 114 | - |
| 13 | g8602.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 115 | 133 | - |
| 8 | g8602.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 134 | 168 | - |
| 6 | g8602.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 40 | - |
| 4 | g8602.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 67 | - |
| 5 | g8602.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0006820 | anion transport | BP |
| GO:0005452 | inorganic anion exchanger activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K24194 (boron transporter)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
